Mesozoic fleas

Giant Mesozoic fleas from China, 1.4 and 0.8 cm long. From Huang et al. (2012)

Strange as it might seem, rather than bringing to mind the opening pages of Michael Crichton’s Jurassic Park ancient fleas suggest to me Frederick Engels’s Dialectics of Nature (1883). In his lampoon of determinism, which might today be directed at a famous evolutionary biologist, Engels wrote:

‘…last night I was bitten by a flea at four o’clock in the morning, and not at three or five o’clock, and on the right shoulder and not on the left calf – these are all facts which have been produced by an irrevocable concatenation of cause and effect, by an unshatterable necessity of such a nature indeed that the gaseous sphere, from which the solar system was derived, was already so constituted that these events had to happen thus and not otherwise.’

But a paper about fossil fleas from the time of the dinosaurs was always going to catch the eye (Huang, D. et al. 2012. Diverse transitional giant fleas from the Mesozoic era of China. Nature, v. 483, p. 201-204), and that they come from China does have an element of inevitability that arises from that country’s rich endowment with sites of exceptional preservation. The fleas are not at all like the shiny creatures that are so difficult to trap in the fur of a cat’s ear, and they are big: up to 2 cm long. Two species come from Middle Jurassic and one from the Lower Cretaceous. The fascinating thing about fleas, however, is that they evolved to live and thrive in fur and feathers.  This niche is signified by their claws, whose form and articulation avoid entanglement with fibres: which is why cat fleas are so nimble. While cat fleas are flattened laterally to help them slip though fur and have powerful legs that allows them to leap from host to host, the Mesozoic fleas are flat from back to front and are not so leggy.

English: This photo was taken by Andy Brookes ...
Cat flea ~1.5 mm long. Image via Wikipedia

Being so large, it seems unlikely that these Mesozoic fleas would have parasitized mammals that were probably far smaller on average than now. But by the Jurassic fossil evidence, largely from China, shows that dinosaurs had developed feather-like cover. Their evolution itself created a niche occupied thereafter by fleas and other bloodsuckers. They are wingless relatives of flies (Order: Diptera) that first appear in the Triassic fossil record, both thought to have stemmed from more primitive scorpionflies (Order: Mecoptera)

Greening and changing the land

English: Liverwort Liverworts are small plants...
A very British liverwort mat. Image via Wikipedia

Evidence for the earliest colonisation of the continents by plants is in the form of spores and body fragments from terrestrial sediments of Middle Ordovician age (~470 Ma) (Rubinstein, C.  et al. 2010. Early Middle Ordovician evidence for land plants in Argentina (eastern Gondwana). New Phytologist, v. 188, p. 365-369)suggest that the first vegetation cover involved simple ground-hugging plants that lacked stems of roots, very like the liverworts that I struggle to deter from my gravel drive. Vinegar is the only solution, preferably boiling, but that does not harm their spores and inevitably they re-emerge. Rearranging the gravel, of a pale pink limestone, is one of a very few means of keeping fit that I can bear, and I suppose the liverworts spice that up a little: but I do detest them. Part of their irritation is that they form an impermeable coating to what once was a passable if minor aquifer that channelled rainfall that would otherwise repeat the house-flooding that greeted me within a day of my moving in. So it was with some solemnity that I read a paper on how these damnable organisms transformed the Ordovician continental surface and the geomorphological processes that shaped it (Gibling, M.R. & Davies, N.S 2012. Palaeozoic landscapes shaped by plant evolution. Nature Geocience, v. 5, p. 99-105).

Sedimentologists have shown that rivers of earlier times formed wide tracts of ephemeral braided channels that transported and reworked sands and gravels that were not hampered by any vegetable binding agent. Floods merely accelerated the braiding and spread coarse sediment across valley floors, repeated spates washing out almost of the fines to take them ultimately to the continental shelves: there are few if any relics of Cambrian and older muddy floodplains. Moreover, untrammelled by vegetation any remaining fine material would be picked up by wind, even in humid climates, to meet the same marine fate. Overbank deposits of silts and clays, unsurprisingly, demand banks over or through which floodwater  escapes from defined channels and is then delayed by low gradients away from the main flow, so to deposit the fines carried by its sluggish speed. Except in arid terrains where braided channels are still the rule, in succeeding geological time evidence grows for nowadays familiar channels, meanders with point bars and eroded opposite banks, levées and floodplains on every conceivable scale. Apparently, they became conspicuous in Silurian times and then forming 30% of all fluvial sediments by the Devonian.

Meanwhile, plants were diversifying though evolution of vascular systems that transport sap up supporting structures that emerged in parallel eventually to form trunks and branches. The consequent rise in volume and in area exposed to sunlight and photosynthesis of a plant’s tissues increased the potential to draw CO2 from the air, witnessed by changes in carbon isotopes that show carbon burial rising shortly after the mid-Ordovician from far lower values in earlier times. (Incidentally, it seems likely that such meagre colonisers as early liverworts thrived sufficiently to contribute to the cooling in the Upper Ordovician that led to sporadic glacial episodes).  Preservation of wood in peats – liverworts are not implicated in any kind of fossil-fuel production – helped to maximise carbon burial by the end of the Palaeozoic Era. But trees make logs and, carried by rivers, logjams. By the Upper Carboniferous effects of damming become common in fluvial sediments, which seemed to serve the formation of islands within wide river channels.

By the present day, vegetation has come to dominate all but the most arid river systems. Even in central Australia sturdy gums able only to get water from below ephemeral river beds end up defining the flow regime and stabilising it on low relief plains that would otherwise be ravaged by sheet floods every rainy season. The authors support stratigraphic observations through the use of scaled down models of channels in vegetated areas by the cunning use of alfalfa seeded to sprout during simulated dry conditions then resuming channel flow in a flume tank.

Gilboa Fossils - Gilboa, New York
Fossils tree stumps from Gilboa, New York (Photo credit: Dougtone)

The earliest substantial trees, represented by wood fragments rarely assignable to any particular structure, occur in the Middle Devonian (385-400 Ma). Although some groups can be differentiated, how their encompassing woodland ecosystems looked has been a mystery until recently . Being ‘priitive’ it has been assumed to be very simple, unlike the well-documented forests of the Carboniferous coal swamps. But, once in a while, a site of exceptional preservation is unearthed, one such being a palaeosol that clearly formed on the floor of a Middle Devonian woodland exposed by quarrying in New York state, USA (Stein, W.E. et al. 2012. Surprisingly complex community found in the mid-Devonian fossil forest at Gilboa. Nature, v. 483, p. 78-81). Once backfill accumulated during the quarry’s active life was removed it became possible to plot the arrangement of roots systems of the last trees to live at the site before inundation and preservation.  Together with other plant material found in the ancient soil, the growing sites have been reconstructed to assess the full ecosystem involved. It was a great deal more complex than previously thought possible, with a series of tiers formed by three large tree types: tall, lollipop-like Eospermatopteris; smaller lycopsid-like trees and subsurface propagators related to gymnosperms that sprouted to form an understorey that may have climbed the larger trees in the manner of vines. Its setting was akin to that of modern mangrove swamps – by the sea – subject to sea-level change that inundated, killed and preserved the coastal woodland.

Very persistent cycles

Carboniferous shale
Carboniferous shale (Photo credit: tehsma)

The last of five written papers in my 1967 final-year exams was, as always, set by the ‘Prof’.  One question was ‘Rock and rhythm: discuss’ – it was the 60s. Cyclicity has been central to observational geology, especially to stratigraphy, the difference from that era being that rhythms have been quantified and the rock sequences they repeat have been linked to processes, in many cases global ones. The most familiar cyclicity to geologists brought up in Carboniferous coalfields, or indeed any area that preserves Carboniferous marine and terrestrial rocks, is the cyclothem of, roughly, seat-earth – coal – marine shale – fluviatile sandstone – seat-earth and so on. Matched to the duration of Carboniferous to Permian glaciations of the then southern hemisphere, and with the relatively  new realisation that global sea level goes down  and up as ice caps wax and wane, the likeliest explanation is eustatic regression and transgression of marine conditions in coastal areas in response to global climate change. Statistical analysis of cyclothemic sequences unearths frequency patterns that match well those of astronomical climate forcing proved for Pleistocene glacial-interglacial cycles.

The Milankovich signals of the Carboniferous are now part of the geological canon, but rocks of that age more finely layered than sediments of the tropical continental margins do occur. Among them are rhythmic sequences interpreted as lake deposits from high latitudes, akin to varves formed in such environments nowadays. Those from south-western Brazil present spectacular evidence of climate change in the Late Carboniferous and Early Permian (Franco, D.R. et al. 2012. Millennial-scale climate cycles in Permian-Carboniferous rhythmites: Permanent feature throughout geological time. Geology, v. 40, p. 19-22). They comprise couplets of fine-grained grey quartz sandstones from 1-10 cm thick interleaved with black mudstones on a scale of millimetres, which together build up around 45 m of sediment. Their remanent magnetism and magnetic susceptibility vary systematically with the two components. Frequency analysis of plots of both against depth in the sequence show clear signs of regular repetitions. Low-frequency peaks reveal the now well-known influence of astronomical forcing of Upper Palaeozoic climate, but it is in the lower amplitude, higher frequency part of the magnetic spectrum that surprises emerge from a variety of peaks. They are reminiscent of the Dansgaard-Oeschger events of the last Pleistocene glacial, marked by sudden warming and slow cooling while world climate cooled towards the last glacial maximum (~1.5 ka cyclicity) and Heinrich events, the ‘iceberg armadas’ that occurred on a less regular 3 to 8 ka basis. There are also signs of the 2.4 ka solar cycle. The relatively brief cycles would have been due to events in a very different continental configuration from today’s – that of the supercontinent Pangaea – and their very presence suggests a more general global influence over short-term climate shifts that has been around for 300 Ma or more.

OSTM/Jason-2's predecessor TOPEX/Poseidon caug...
El Niño effect on sea -surface temperatures in the eastern Pacific Ocean. Image via Wikipedia

Closer to us in time, and on a much finer time scale are almost 100 m of finely laminated shales from the marine Late Cretaceous of California’s Great Valley (Davies, A. et al. 2012. El Niño-Southern Oscillation variability from the late Cretaceous Marca Shale of California. Geology, v. 40, p. 15-18). The laminations contain fossil diatoms: organisms that are highly sensitive to environmental conditions and whose species are easily distinguished from each other. It emerges from studies of the diatoms in each lamination set that they record an annual cycle of seasonal change related to marine upwellings and their varying strengths, with repeated evidence for influx of fine sediment derived from land above sea level and for varying degrees of bioturbation that suggests periods of oxygenation. Spectral analysis of the intensity of bioturbation, which assumes the lamina are annual, and other fluctuating features reveals peaks that are remarkably close to those of the ENSO cyclicity that operates at present, at 2.1-2.8 and 4.1-6.3 a, as well as repetitions with a decadal frequency.

The annual cycles bear similar hallmarks to those imposed by the monsoonal conditions familiar from modern California, which fluctuated in the Late Cretaceous in much the same way as it does now – roughly speaking, alternating El Niño and La Niña conditions. That is not so surprising, as the relationship between California and the Pacific Ocean in the Cretaceous would not have been dissimilar from that now. The real importance of the study is that it concerns a period in Earth’s climate history characterised by greenhouse conditions, that some predict would create a permanent El Niño – an abnormal warming of surface ocean waters in the eastern tropical Pacific that prevents the cold Humboldt Current along the Andean coast of South America from supplying nutrient to tropical waters. The very cyclicity recorded by the Marca Shale strongly suggests that the ENSO is a stable feature of the western Americas. Recent clear implications of ENSO having teleconnections that affect global climate, on this evidence, may not break down with anthropogenic global warming. This confirms similar studies from the Palaeogene and Neogene Periods.

Time wars flare up again

English: A diagram of the geological time scal...
Time's spiral Image via Wikipedia

Last year Earth Pages News reported a rationalisation of the way in which geological time is signified (Rationalising geological time 7 May 2011). A working group set up by the International Union of Pure and Applied Chemistry (IUPAC) and the International Union of Geological Sciences (IUGS) defined the year as the base unit, standardizing it to the time in seconds between one solstice and the next at the equator for year 2000 (3.1556925445 × 107 s) thereby linking it to the Système international d’unités or SI base unit of the second, itself defined in terms of behaviour of the caesium atom. It is to be signified by ‘a’ for annus (year in Latin) and preceded by ‘k’, ‘M’ and ‘G’  for thousands, millions and billion years, complying with the SI progression in steps of 103 for units.

The sticking point for some, mainly in the US (e.g. Science magazine and many geoscientists there) is that the ka, Ma, Ga symbols are to apply not only to times before the present but also to spans of geological time. Since the agreed convention is incorporated into SI it has almost the force of law for scientists , so that the Cretaceous Period will be said to have begun at 145.5±4.0 Ma ago, ended at 65.5±0.3 Ma ago and was 80 Ma long, instead of the latter being in m.y., m.yr., mya  or Myr according to what seem to have been personal quirks or those of scientific journals.

Somewhat florid reaction against the rationalisation (Christie-Blick, N. 2012 Geological time conventions and symbols. GSA Today, v. 22 (February 2012 issue), p. 28) seems to have flowed from a deliberation on the IUPAC-IUGS proposal (in Prague, Spring 2010) by a lesser world body: the International Commission on Stratigraphy’s  (ICS) International Subcommission on Stratigraphic Classification (ISSC). The meeting voted 16 to 2 to reject the proposal – a substantial number of voting members abstained – claiming that it violated SI ‘rules’ regarding base- and derived units. The issue, on reaching the ICS meeting, as the same Prague workshop, seems to have been greeted by a 50:50 split. A closed meeting of the ICS Bureau (now we can begin to see the kind of thinking involved here…) on the workshop’s last day unanimously adopted the motion ‘We neither accept nor reject the IUGS-IUPAC Task Group’s recommendation to apply Ma, generally, as the unit of deep time. We accept the argument for Ma as a single unit for time but would recommend flexibility, allowing for the retention of Ma as specific notation for points in time (i.e., dates) and myr as a unit of time denoting duration. We agree with the spirit of this statement’ [my italics]. ‘Neither accepting nor rejecting’ is something familiar from minutes of the Central Committee of the former USSR, being rumoured to have been Joseph Vissarionovich Stalin’s favoured formulation in moments of uncertainty: a little like the old ‘Belfast Question’, ‘Are you for us or against us’ from someone whose politics is not entirely clear.

An argument proffered by Christie-Blick is, ‘No one objects to the storming of the Bastille on 14 July 1789 (a date) or to the construction of Stonehenge from 2600–1600 BC (an interval specified by two dates). In the case of the latter, we say that the job took 1000 years, not 1000 BC.’ This forgets something quite practical: geochronologist rarely if ever, ‘neither accept nor reject’ AD, BC BCE, or CE but express time in years before present, with the odd convention that ‘the present’ was 1950, before atmospheric testing of thermonuclear devices. What is wrong with the answer to the question, ‘When did the Cretaceous begin?’ being 145.5 Ma ago, or ‘80 Ma’ in answer to, ‘How long did it last?’ Who would prefer the alternative to the second question –  80 (choose your preferred symbol from the following: m.y., m.yr., mya.  Myr., million years or millions of years)?

Geophysics reveals secrets of the beaver

Beaver Hut
Beaver lodge and dam (Photo credit: Bemep)

One of the interesting things about the beaver is that its obsession with civil engineering may have a profound effect upon landscape. Before Europeans set foot in North America, it is estimated that up to 400 million of them inhabited the continent. The ponds that they create by building the dams in which they live securely, encourage sedimentation. It is quite possible that this creates recognisable stratigraphic formations; but no-one really knows as active and wet beaver habitats hide what lies beneath them. It is clearly urgent to obtain this intelligence: the Geological Society of America’s monthly Geology contained in its first issue for 2012 a paper that indeed probes the legacy of large rodents long gone (Kramer, N. et al. 2012. Using ground penetrating radar to ‘unearth’ buried beaver dams. Geology, v. 40, p. 43-46).

The target for surveillance was the eponymous Beaver Meadows in Colorado, USA, and not only did the researchers from Colorado State University deploy ground-penetrating radar, but used the seismic reflection method as well, to quantify volumes of beaver-induced sedimentation. Fortunately, despite their past presence in some strength, beavers no longer frequent Beaver Meadows and no ethical lines in the sand were crossed. Beaver and elk seemingly have long competed for the meagre resources of Beaver Meadows, the rodent having finally succumbed locally to determined efforts by the elk to consume the beavers’ victuals. As disconcerted and no doubt sulking beavers failed to maintain their dams and lodges, the water table fell, further encouraging the elk. Eventually, at some time after the Beaver Survey of 1947, the last of them moved to new meadows. Their ravages (see http://animal.discovery.com/videos/fooled-by-nature-beaver-dams.html) of what would otherwise be dense woodland have, however, made it possible for geophysicists to try out their sophisticated kit on a new and thorny issue: they ran 6 km of GPR and seismic profiles.

I came across this handsome animal (Castor can...
A beaver. Image via Wikipedia

In much the same way as larger scale geophysical data are interpreted for petroleum traps, signs of hydrocarbons, mighty listric faults and zones of tectonic inversion, the beaver-oriented sections potentially yield considerable insight to the trained eye. There are indeed beaverine sedimentary aggradations of Holocene age above the local glacial tills. Beneath Beaver Meadow they amount to as much as 50% of post-glacial sediment. Apparently, the deposits have a linear element that follows the local drainages.

Petrologists probe Minoan collapse

Partial panorama of Santorini and Thera caldera
Modern Santorini and the drowned Thera caldera. Image via Wikipedia

A burning topic for Bronze Age archaeologists, such as the delightful  Bettany Hughes – biographer of Helen of Troy, is the explosive collapse of the volcano Thera (modern Santorini) whose distant effects (ash and tsunamis)wiped out the Minoan civilisation of Crete around 1600 BCE, giving rise to Plato’s legend of Atlantis. It was a big one alright, hurling of the order of 60 km3 of pulverised magma skywards, though not the largest historic eruption: that involved 160 km3 from the Tambora volcano on Indonesia’s island of Sumbawa in 1815. The inhabitants of Santorini simply disappeared, after evacuating their homes during precursor earthquakes and small eruptions, which were then buried beneath many metres of tephra when Thera literally ‘blew its top’. Little ash fell on Crete, yet its northern coast shows clear signs of a major tsunami. The reason for such an engulfing wave is revealed by the nature of Thera’s eruption: after evacuating magma, the edifice collapsed to form a caldera clearly revealed by the elliptical bay around which the remnants stand as the various islands of Santorini.  Caldera formation would have displaced vast amounts of sea water.

Santorini has been well studied by volcanologists, still being an astonishingly awesome spectacle as well as preserving the full record of the eruption and the archaeology that it buried (http://santorini-eruption.org.uk/). Empirical research reveals four distinct eruptive phases probably over a period of a few months. The explosive force of the final catastrophe probably resulted from seawater reaching the sub-volcanic magma chamber: not a difficult feat of imagination. What has not been known is how the magma evolved over times leading up to the cataclysm, and that is a knotty issue for all volcanoes that pose a major threat because of evidence for repeated and perhaps cyclic activity. A new technique is now capable of lifting the veil on such purely magmatic evolution, and is based on the changes that took place in minerals that crystallised over lengthy periods while the magma cooled slowly at depth but was periodically added to (Druitt, T.H et al. 2012. Decadal to monthly timescale of magma transfer and reservoir growth at a caldera volcano. Nature, v. 482, p. 77-80).

Such phenocrysts are commonly found in fragments of pumice that make up Theran tephra, and they are commonly zoned in a concentric fashion, especially those of the mineral feldspar, each zone marking a phase of growth that occasionally traps samples of magma in the form of now glassy inclusions. The zones mark chemical changes in the magma as new pulses are added in the sub-volcanic chamber, and sometimes temperature changes and loss of gas. Although the zone boundaries a are expected to be sharp in terms of chemical differences, in practice they are blurred as a result of element diffusion at high temperatures. Diffusion is a predictable process and so the degree of blurring indicates the time at which a new zone formed relative to that of eruption and cooling, when diffusion would have stopped abruptly. Rates of high-temperature diffusion depend on the element concerned. So using a suite of trace elements in feldspar zones gives a variety of chronometers. A fast-diffusing element such as Mg can chart changes of the order of decades to months, while a more sluggish trace element – for instance titanium – can examine changes on longer timescales.

The results obtained by the authors present a surprise: although Thera had last erupted catastrophically 18 ka previously, additional magma recharged the volcano only in the last few decades before it extinguished life on Santorini and set the Minoan civilisation on a downward spiral. Indeed, magma continued to be added even in the last few months. Calderas, such as that at Yellowstone in the western US, to which are linked ancient ash layers covering areas hundreds and thousands of kilometres away, pose threats as large and even bigger than Thera. If Thera is anything to go by, they lie in repose long after an eruption and signs of recharge may herald eruption in the near future. The Yellowstone caldera, that has lain dormant for 640 ka is indeed showing signs of magmatic ‘stoking’, as the Earth’s surface there is slowly bulging. It produced ‘supereruptions’ that dwarfed Thera at 2.1 Ma (2500 km3), 1.3 Ma (280 km3) and 0.6 ka (1000 km3). For each of these and several other calderas there are abundant tuffs that carry phenocrysts, whose zonation is yet to be checked for signs of past behaviour by their local magma chambers.

Late Devonian: mass extinction or mass invasion?

A hand made lookalike for User:Dragons flight'...
Image via Wikipedia

The later part of the Devonian (the Frasnian and Famennian Stages) once marked the second largest marine mass extinction (~375 Ma) of the Phanerozoic Eon: it was one of the ‘Big Five’. For the last decade the drop in marine biodiversity in that interval has come under scrutiny: partly because it may have involved several  events;  no well-supported extinction mechanism has emerged; and extinctions seem have been concentrated on three animal groups – trilobites, brachiopods and reef corals. Something large did happen, as reef-building corals almost disappeared and coral reefs only returned with the rise of modern (scleractinian) corals in the Mesozoic. While the end of the Devonian still figures widely as having experienced a mass extinction event, more detailed palaeontological work at the genus and species level suggests another possibility.

‘Officially’ a mass extinction event must exceed the background extinction rate throughout the Phanerozoic and be above that in immediately preceding and following stages: statistically significant, that is. They always give rise to a marked reduction in biodiversity, but another mechanism can do that without extinctions suddenly increasing. The rate at which new species emerge can fall below that of species extinctions, when the overall number of living species falls. As far as ecosystems are concerned both processes are equally severe, but the causes may be very different.

Hederelloids encrusting a Spiriferida brachiop...
Brachiopod from the Devonian of Ohio, USA. Image via Wikipedia

Reviewing detailed records of Devonian species of two genera of brachiopods and one bivalve genus (50 species in all) in five North American stratigraphic sequences, Alycia Stigall of Ohio University, USA noted apparently significant variations in the local assemblages (Stigall, A. L. 2012. Speciation collapse and invasive species dynamics during the Late Devonian ‘Mass Extinction’. GSA Today, v. 22(1), p. 4-9). Speciation overall fell in the Frasnian and the preceding Givetian, while rate of extinction barely changed. For the three studied genera ,speciation reached low values in the Frasnian and Famennian, but that was accompanied by an equally large fall in extinctions. In this narrow sample we seem to be seeing not an extinction crisis but one of biodiversity. Why?

The Late Devonian saw repeated ups and downs in sea level, which repeatedly connected and disconnected shallow- to moderate-depth marine basins. The fossil record shows repeated cases of species from one basin colonising another, each invasion accompanying rapid marine transgression.. One means whereby species arise is through prolonged isolation of separate populations of the ancestral species through independent genetic drift and mutation. The episodic connection of basins may have prevented such allopatric speciation. Interestingly, the invading species  were dominantly animals with a broad tolerance for environmental conditions.

Whether this mechanism applied to all three main animal groups whose diversity plummeted in Late Devonian times remains to be seen, and it begs the question ‘why didn’t it happen among other animal groups that were less affected by whatever the events were?’ One of the problems associated with decreasing biodiversity in modern marine (and terrestrial) settings is growth in the numbers of invasive species, so the work on 375 Ma fossils might help understand and mitigate current ecological issues. The only difference is that for many of the hyper-successful invader species the means of invasion has been provided by human activities. brachiopod brachioopod

Research misconduct

whistleblowerIn 2011 there was a growing trickle of news about various kinds of research malpractice: data fabrication, falsification and obfuscation (not reporting adverse outcomes); plagiarism (http://earth-pages.co.uk/2008/01/01/watch-out-burglars-about/) ; repeated publication of data, text and diagrams (self-plagiarism); ‘guest’ contributors; plus other kinds of scientific fraud and chicanery (http://en.wikipedia.org/wiki/Scientific_misconduct). Motives are many, from malice to laziness, but more often than not are a mixture of ambition, greed, jealousy, desperation and paranoia that increasingly form the downside of academic life – not the least in science. Life is so hard in a career dominated by promotion, which in academe rests on: publication lists; peer citations; journal impact factors; institutional income generation and, let’s face it, by the kind of individual self-regard and hubris that drives people to seek fame and celebrity. The wider population has grown accustomed to this as bystanders watching Big Brother, the X-Factor and Fame Academy.

Fiddling research has reached such a level as to provoke the world’s most prestigious research outlet, Nature, to include an editorial on the topic (Editorial 19 January 2012. Face up to fraud. Nature, v. 481, p. 237-238), albeit after a first lead about the Antarctic Treaty at the centenary of the race to the South Pole, and followed by a puff for articles in the same issue on how to get research funding from the public or philanthropists.

As many scientists suspect, in fact what does emerge about research malpractice is the tip of the proverbial iceberg, some admitting to wandering from the path of righteousness themselves (but not saying how or where). One mild form is making unsubstantiated claims: a great many geologists (including me) have trodden very thin ice in this regard (unless they wisely included the ‘Get Out of Jail’ verb ‘to speculate’), but few innocent bystanders, if any, have met a horrid fate as a result of resultant health and safety ‘issues’. A great deal that should not does get through peer-review to enter the canon of whichever discipline. Academic fraud is a quasi-crime with few risks of detection, though punishment can be swingeing,  in the manner of being cast into the ‘dark place’.

According to Nature, what makes Britain seem to be a haven of academic honesty is the risk that both journals and ‘whistleblowers’ face from libel laws, should deeds and authors be named and linked. Moreover, certain kinds of gross malpractice never reach peer-reviewed publication. Examples are: malicious falsification of someone else’s data by a perpetrator with access to the data on, say, a lab server; swapping analytical sample labels; destroying lab records(http://earth-pages.co.uk/2010/11/04/sabotage-in-science-4/); petty theft of ideas (on which there is no formal copyright), for instance through copying poster presentations at conferences; misuse of peer-review privileges – generally anonymous (http://earth-pages.co.uk/2006/08/01/anonymous-referees-2/); menacing a presenter at a conference or disrupting their presentation. Victims of such actions rarely have any redress, unless the perpetrator is actually caught ‘in flagrante delicto’, so to speak (http://earth-pages.co.uk/2010/11/04/sabotage-in-science-4/).

Whistle blowers’ or complainants then face the defensive mechanisms of the academic world: not dissimilar to those of the musk ox. How far you get as regards redress depends to a large extent on the seniority of the perpetrator. An extremely brave friend cited, with abundant evidence, his vice-chancellor for gross cronyism: he was soon ‘on the cobbles’ with the VC (male) remaining ‘virgo intacto. Yet an Industrial Tribunal took a very dim view of the whole affair: my pal paid off his mortgage and lives well in retirement from the compensation awarded by the tribunal. It takes an exceptionally brave graduate student to take on their supervisor(s) for malfeasance (or even the lesser misfeasance and nonfeasance – http://en.wikipedia.org/wiki/Misfeasance). The likely best outcome (after long and harrowing procedures) is a kind of bribe – more time to complete – but most victims just disappear without completing. Unless the perpetrators are low on the academic scale (they might get a reprimand at worst), promotion to management or enhanced early retirement is a common response by senior management to mounds of incontrovertible evidence of guilt. The oddest fate for someone flying high in the institutional firmament was rumoured to be a posting to a far-flung outpost of the former British Empire: but I digress…

The geosciences seem immune to research malpractice, which may reflect at best the small numbers involved in the discipline or at worst because no-one notices, or cares for that matter. Unless, that is, dear reader, you know different…  Most important, for graduate students who are the most usual victims: protect yourselves (http://earth-pages.co.uk/2003/12/01/protecting-your-intellectual-property-2/).

Dust: heating or cooling?

In the left image, thin martian clouds are vis...
Mars: with and without dust storms in 2001. Image via Wikipedia

Once every 13 years on average dust blots out most of the surface of Mars turning it into an orange ball. The last such planet-encircling dust storm occurred in 2001, but lesser storms spring up on a seasonal basis. Yet Martian seasons have very different weather from terrestrial ones because of the greater eccentricity of Mars’s orbit, as well as the fact that its ‘weather’ doesn’t involve water. When Mars is closest to the Sun solar heating is 20% greater than the average, for both hemispheres. The approach to that perihelion marks the start of the dust season which last a half the Martian year. Unsurprisingly, the sedimentary process that dominates Mars nowadays is the whipping up and deposition of sand and dust, though in the distant past catastrophic floods – probably when subsurface ice melted – sculpted a volcanic landscape pockmarked with impact craters up to several thousand kilometres across. Waterlain sediments on early Mars filled, at least in part, many of the earlier craters and probably blanketed the bulk of its northern hemisphere that is the lowest part of the planet and now devoid of large craters. Erosion and sedimentation since that eventful first billion years has largely been aeolian. Some areas having spectacular dunes of many shapes and sizes, whereas more rugged surfaces show streamlined linear ridges, or yardangs (http://earth-pages.co.uk/2011/05/08/winds-of-change/), formed by sand blasting. Most of the dust on Mars is raised by high winds in the thin atmosphere sweeping the great plains and basins, and, by virtue of Stokes’s law, the grains are very much smaller than on Earth.

The dustiest times on Earth, which might have blotted out sizeable areas from alien astronomers, in the last million years have been glacial maxima, roughly every 100 ka with the latest 20 ka ago. Layering in the Antarctic ice core records such dust-dominated frigid periods very precisely. Less intricate records formed away from the maximum extent of ice sheets as layers of fine sediment known as loess, whose thickness variations match other proxy records of palaeoclimate nicely. Loess, either in place or redeposited in alluvium by rivers, forms the most fertile soil known – when the climate is warm and moist. The vast cereal production of lowland China and the prairies of North America coincides with loess: it may seem strange but a large proportion of 7 billion living humans survive partly because of dust storms during glacial periods of the past.

Being derived from rock-forming minerals dust carries with it a diverse range of chemical elements, including a critical nutrient common on land but in short supply in ocean water far offshore: iron in the form of oxide and hydroxide coatings on dust particles – the dust coating your car after rain often has a yellow or pinkish hue because of its iron content. Even when the well-known ‘fertilizer’ elements potassium, nitrogen and phosphorus are abundant in surface ocean water, they can not encourage algal phytoplankton to multiply without iron. Today the most remote parts of the oceans have little living in their surface layers because of this iron deficiency. Yet oceanographers and climatologists are pretty sure that this wasn’t always the case. They are confident simply because reducing the amount of atmospheric carbon dioxide and its greenhouse effect to levels that would encourage climate cooling and glacial epochs needed more carbon to be buried on the ocean floors than happens nowadays, and lifeless ocean centres would not help in that.

Dust plume off the Sahara desert over the nort...
Saharan dust carried over the Atlantic Ocean by a tropical cyclone. Image via Wikipedia

At present, the greatest source of atmospheric dust is the Sahara Desert (bartholoet, J. 2012. Swept from Africa to the Sahara. Scientific American, v. 306 (February 2012), p. 34-39). Largely derived from palaeolakes dating from a Holocene pluvial episode, Saharan dust accounts for more than half the two billion metric tonnes of particulate atmospheric aerosols dispersed over the Earth each year. Located in the SE trade-wind belt, the Sahara vents dust clouds across the Atlantic Ocean, most to fall there and contribute dissolved material to the mid-ocean near-surface biome but an estimated 40 million t reaches the Amazon basin, contributing to fertilising the otherwise highly leached tropical rain-forest soils. While over the ocean the high albedo of dust adds a cooling effect to the otherwise absorbent sea surface. Over land the fine particles help nucleate water droplets in clouds and hence encourages rainfall. The climatic functions of clouds and dusts are probably the least known factors in the climatic system, a mere 5% uncertainty in their climatic forcing may mean the difference between unremitting global warming ahead or sufficient cooling by reflection of solar radiation to compensate for the cumulative effects of industrial CO2 emissions.

Recording amounts of dust from marine sediments quantitatively is very difficult and impossible in terrestrial sediments, but superb records tied accurately to time at annual precision exist in ice sheets. Low dust levels in Greenland and Antarctic ice tally well with the so-called ‘Medieval Climate Anomaly’ (a warm period) whereas through the 13th to 19th centuries (the ‘Little Ice Age’) more dust than average circulated in the atmosphere. Crucially, for climate change in the industrial era, there has been a massive spike in dust reaching near-polar latitudes since the close of the 18th century during the period associated with signs of global warming: a counterintuitive relationship, but one that is difficult to interpret. The additional dust may well be a result of massive changes in land use across the planet following industrialised agricultural practices and growing population. There are several  questions: does the additional dust also reflect global warming with which it is correlated, i.e. evaporation of the huge former lakes in the Sahara (e.g. Lake Chad); is the dust preventing additional greenhouse warming that would have taken place had the atmosphere been clearer; is it even the ‘wrong kind of dust’, which may well reflect short-wave solar radiation away but also absorbs the longer wavelength thermal radiation emitted by the Earth’s surface, i.e. an aerosol form of greenhouse warming. Needless to say, neither clouds nor dust can be factored into climate prediction models with much confidence.

Within-plate earthquakes

 

 

English: Earthquakes recorded in the New Madri...
Recent earthquakes in the US mid-west around New Madrid Missouri. Image via Wikipedia

 

Almost all devastating earthquakes within living memory and the tsunamis that ensued from some of them have occurred where tectonic plates meet and move past one another either horizontally through strike-slip motion or vertically as a result of subduction. This link between real events and the central theory of global dynamics gives an impression of inherent predictability about where damaging and deadly earthquakes might happen, if not the more useful matter of when the lithosphere might rupture. Such confidence is potentially highly dangerous: the most deadly earthquake in recorded history killed at least 800 thousand people in China’s Shanxi Province in 1556 when according to  a description written shortly afterwards, ‘… various misfortunes took place… In some places, the ground suddenly rose up and formed new hills, or it sank abruptly and became new valleys. In other areas, a stream burst out in an instant, or the ground broke and new gullies appeared…’. Shanxi is far from any plate boundary. A study of Chinese historic records covering the last two millennia (Liu, M. et al. 2011. 2000 years of migrating earthquakes in North China: How earthquakes in midcontinents differ from those at plate boundaries. Lithosphere, v. 3, p. 128-132) shows a pattern to the position of large intraplate events.  Rather than occurring along lines as do those at plate boundaries, earthquakes ‘hopped’ from place to place without affecting the same areas twice. Liu and colleagues consider this almost random pattern to result from reactivation of interlinked faults through broad-scale and gradual tectonic loading of the crust by far off plate movements. After a short period of reactivation one fault locks so that energy build-up is eventually released by another in the plexus of crustal weaknesses.

The best studied site of such intraplate seismicity lies midway along the Mississippi valley in the mid-US, between St Louis and Memphis. In 1811 and 1812 four Magnitude 7 to 8 earthquakes struck, the most affected place being the small township of New Madrid on the banks of the great river where mud and sand spouted from numerous sediment volcanoes. No-one died there but tremors were felt over a million square kilometers, bells ringing spontaneously as far away as Boston and Toronto. It is now known that this section of the Mississippi basin lies above a graben that affects the ancient basement beneath the alluvial sediments, one of whose faults was reactivated, perhaps in an analogous way to the hypothesis about Chinese seismicity. A coauthor in Liu et al. (2011), Seth Stein of Northwestern University, Illinois, believes stress redistribution through a Mid-western fault network was responsible and other events are likely at some uncertain time in the future on this and other areas underpinned by ancient fault complexes. Indeed sporadic ‘quakes up to Magnitude 7 have affected the eastern US and Canada and the Atlantic seaboard since European settlement. But since the largest of the New Madrid quartet of earthquakes, populations have grown across the likely areas of tenuous risk and future ones could have extremely serious consequences for which it is difficult to plan by virtue of unpredictability of both place and timing: in some respects a more worrying prospect than is the case where major events are inevitable – sometime – as along the San Andreas Fault. There are few, if any, major conurbations worldwide that could be considered seismically safe if the theory of networked stress redistribution through otherwise inert parts of continental crust is borne out.

In some respects the theory is a small-scale version of the suggested mechanical linkage through all major plate boundaries that has been suggested by some to account for the clustering in time of great earthquakes – around and above Magnitude 8 – around the globe. Since 2000 great earthquakes have occurred on subduction zones beneath Sumatra, the Himalaya, the Andes, Central America, Alaska, New Guinea, the mid-Pacific, Japan and the Kurile islands, on the strike-slip system that cuts New Zealand and in the intraplate setting of the 2008 Sichuan earthquake in China. Almost all plate boundaries link up globally, but although it seems likely that stress is redistributed along boundaries, especially between adjacent segments, as documented for the great Anatolian fault system of Turkey and the Indonesian subduction zone, a mechanism that transmits stress beyond individual plates seems unlikely.

Massive event in the Precambrian carbon cycle

English: Cyanobacteria
Cyanobacteria: earliest producers of oxygen in the Precambrian. Image via Wikipedia

The entire eukaryote domain of life, from alga to trees and fungi to animals, would not exist had it not been for the emergence of free oxygen in the oceans and atmosphere about 2.4 billion years ago; thanks in large part to the very much simpler photosynthetic blue-green bacteria. The chemistry behind this boils down to organisms being able to transfer electrons from elements and compounds in the inorganic world to build organic molecules incorporated in living things. Having lost electrons the inorganic donors become oxidised, for instance ferrous iron (Fe2+ or Fe-2) becomes ferric iron (Fe3+ or Fe-3) and  sulfide ions (S2-) become sulfate (SO42-) and the organic products that receive electrons principally involve reduction of carbon, on the OilRig principal – Oxidation involves loss of electrons, Reduction involves gain. Since the Great Oxygenation Event (GOE), ferric iron and sulfate ions now account for 75% of oxidation of the lithosphere and hydrosphere while free oxygen (O2) is a mere 2-3 % (Hayes, J.M. 2011. Earth’s redox history. Science. V. 334, p. 1654-1655; an excellent introduction to the geochemistry involved in the GOE and the carbon cycle). Free oxygen is around today only because more of it is produced than is consumed by its acting to oxidize ferrous iron and sulfide ions supplied mainly by volcanism, and carbon-rich material exposed to surface processes by erosion and sediment transport.

Eukaryote life has never been snuffed out for the last two billion years or so, but it has certainly had its ups and downs. To geochemists taking the long view oxygen might well seem to have steadily risen, but that is hardly likely in the hugely varied chemical factory that constitutes Earth’s surface environments, involving major geochemical cycles for carbon, iron, sulfur, nitrogen, phosphorus and so on, that all inveigle oxygen into reactions. Tabs can be kept on one of these cycles – that involving carbon – through the way in which the proportions of its stable isotopes vary in natural systems. If all geochemistry was in balance all the time, all materials that contain carbon would show the same proportions of 13C and 12C as the whole  Earth, but that is never the case. Living processes that fix carbon in organic compounds favour the lighter isotope, so they show a deficit of 13C relative to 12C signified by negative values of δ13C. The source of the carbon, for instance CO2 dissolved in sea water, thereby becomes enriched in 13C to achieve a positive value of δ13C, which may then be preserved in the form of carbonates in, for instance, fossil shells that ended up in limestones formed at the same time as organic processes were favouring the lighter isotope of carbon. Any organic carbon compounds that ocean-floor mud buried before they decayed (became oxidised) conversely would add their negative δ13C to the sediment. Searching for δ13C anomalies in limestones and carbonaceous mudrocks has become a major means of charting life’s ups and downs, and also what has happened to buried organic carbon through geological time.

A most interesting time to examine C-isotopes and the carbon cycle is undoubtedly the period immediately following the GOE, in the Palaeoproterozoic Era (2500 to 1600 Ma). From around 2200 to 2060 Ma the general picture is roughly constant, high positive values of δ13C (~+10‰): more organic carbon was being buried than was being oxidised to CO2. However, in drill cores through the Palaeoproterozoic of NW Russia carbonate carbon undergoes a sharp decline in its heavy isotope to give a negative δ13C  (~-14‰) while carbon in organic-rich sediments falls too (to~-40‰): definitely against the general  trend (Kump, L.R. et al. 2011. Isotopic evidence for massive oxidation of organic matter following the Great Oxidation Event. Science. V. 334, p. 1694-1696). Oxygen isotopes in the carbonates affected by the depletion in ‘heavy’ carbon show barely a flicker of change: a clear sign that the 13C δ13C deficit is not due to later alteration by hydrothermal fluids, as can sometimes cause deviant δ13C in limestones. It is more likely that a vast amount of organic carbon, buried in sediments or dissolved in seawater was oxidised to CO2 faster than biological activity was supplying dead material to be buried or dissolved. In turn, the overproduction of carbon dioxide dissolved in seawater to affect C-isotopes in limestones. Such an event would have entailed a sharp increase in oxygen production to levels capable of causing the oxidation (~ 1% of present levels). Yet this was not the time of the GOE (2400 Ma) but 300-400 Ma later. A possible explanation is a burst in oxygen production by more photosynthetic activity, perhaps by the evolution of chloroplast-bearing eukaryotes much larger than cyanobacteria.

Excitement over early animals dampened

Alga (Volvox sp.)
Volvox cyst. Image via Wikipedia

The Neoproterozoic lagerstätte in the Doushantuo Formation in the south of China was until recently thought to be a source of astonishing information about Earth’s earliest animals (See Ancestral animal? in EPN August 2004) that preceded the appearance of those with hard parts at the start of the Phanerozoic.  It contains well-preserved fossils that resemble embryos, algae, acritarchs, and small bilaterians. Dated at between 580 to 600 Ma(See Age range of early fossil treasure trove  in EPN February 2005), the Doushantuo directly overlies cap carbonates representing the emergence of Earth’s climate from a Snowball epoch represented by a tillite beneath the carbonate sequence. A detailed examination using synchrotron X-ray tomography of the putative animal embryos does show clear signs of cell doubling or palintomy (Huldtgren, T. et al. 2011. Fossilized nucluei and germination structures identify Ediacaran ‘animal embryos’ as encysting protists. Science. V. 334, p. 1696-1699) but also internal cell features most likely to be nuclei, but which have no counterparts in animal embryos. The organisms which the fossils most resemble are indeed eukaryotes, but of a kind separate from animals known as Holozoa. Yet there are striking resemblances with eukaryotes more distant from animals, such as the modern Volvox, a type of alga (Butterfield, N.J. 2011. Terminal developments in Ediacaran embryology. Science. V. 334, p. 1655-1656), that developed from an ancestor further back in time than the separation of metazoan animals from holozoans.

Mistaken conclusions from Earth’s oldest materials

Microscope projection close-upThe oldest materials on the planet are tiny zircon grains that were washed into conglomerate in Western  Australia about 2650 to 3050 Ma ago. It wasn’t the fact that the grains are zircons, which are among the most durable materials around, but the range of ages that they revealed when routinely analysed. U-Pb dating of detrital zircons is a well tested means of finding the provenance of sedimentary materials as an indicator of orogenic and igneous events that formed the crust from which they were eroded. In the original study of the Jack Hills zircons some showed ages that might reasonably have been expected from late sediments in an Archaean craton: around 3.5 billion years is about the maximum age for orogenic events there. What astonished all geoscientists was that a proportion of the grains gave ages of more than 4 billion years, some as old as 4.4 Ga: here was a window on the missing first half billion years of Earth history, the Hadean.

Subsequent work on yet more zircons confirmed the original age span but other kinds of analysis led to a variety of claims: that continental crust was around in abundance within 100 Ma of Earth having formed; geothermal heat =flow was not especially high;  liquid water was available for geological processes, including the origin of life; plate tectonics may have started early…. The topic has cropped up several times in EPN since the issue of 1 January 2001. Quite a lot of the claims emerged from studies of other minerals enclosed by the ancient zircons, such as quartz and micas, and now they have been checked again by geochemists from Western Australia (Rasmussen, B. et al. 2011. Metamorphic replacement of mineral inclusions in detrital zircons from Jack Hills, Australia: Implications for the Hadean Earth. Geology, v. 39, p. 1143-1146). It turns out that the inclusions formed at temperatures well below those of magmas, between 350 to 490°C: more like those of metamorphism. Indeed, uranium-bearing rare-earth phosphate minerals, xenotime and monazite, also locked in the zircons not only turn out to be metamorphic in origin too (both are also formed magmatically) but date to between 2700 and 800 Ma.

While the  Hadean zircon dates remain robust, a closer look at their inclusions shows that they did not remain geochemically closed systems thereafter. It was on the assumption of zircons being geological ‘time capsules’ that much of the excitement rested. Even using the presence of zircons from 4.4 Ga – they are most common in granites but do occur in mafic and intermediate igneous rocks – to suggest early ‘sialic’ continental crust is suspect. Despite having some tiny bits from Earth’s early days, it seems we are none the wiser.

Galactic controls

English: Artist's conception of the Milky Way ...
Artists impression of the Milky Way viewed along its axis. Image via Wikipedia

Palaeoclimatologists are quite content that an important element in controlling the vagaries of climate is due to gravitational forces that cyclically perturb Earth’s orbit, it axial tilt and the way the axis of rotation wobbles in a similar manner to that of a gyroscope. The predictions about this by James Croll in the late 19th century, which were quantified by Milutin Milankovich during his incarceration during World War I, triumphed when the predicted periods of change were found in deep-sea floor sediment records in 1972. Authors of ideas that link Earth system changes  to the progress of the Solar system through the Milky Way galaxy haven’t had the same accolades. One of the first to suggest a galactic link was Joe Steiner (Steiner, J. 1967. The sequence of geological events and the dynamics of the Milky Way Galaxy. Journal of the  Geological Society of  Australia, v.  14, p. 99–132.) but his work is rarely credited.

There has been an upsurge of interest in the last decade or so. In a recent issue of New Scientist Stephen Battersby reviews what galactic ‘forcings’ may have accomplished during the 4.5 billion-year history of our world (Battersby, S. 2011. Earth odyssey. New Scientist, v. 212 (3 December issue), p. 42-45). Having formed probably much closer to the galactic centre than its current position the Solar System has drifted, perhaps even ‘surfed’ gravitationally, outwards to reach its present ‘suburban’ position in one of the spiral arms. There are regularities to the now stabilised orbital movements: once every 200 million years the Solar System completes a full orbit; this orbit wobbles across the hypothetical plane of the galactic disc by as much as 200 light years, moving with and against the Milky Way’s cosmic motion. It has proved impossible so far to detect any sign of the orbital 200 Ma periodicity in events on the Earth, and most attention has centred on the wobble.

Steiner suggested that this motion may have crossed different polarities of the galactic magnetic field, perhaps triggering the periodicity of geomagnetic  changes in polarity, but this now seems unlikely. However, his suggestion that glacial epochs, such as those in the Palaeo- and Neoproterozoic, at the end of the Palaeozoic Era and at present, may have resulted from the Solar System’s passage through dust and gas banding in the Milky Way continues to have its attractions (e.g. Pavlov, A.A. et al. 2005. Passing through a giant molecular cloud: “Snowball” glaciations produced by interstellar dust, Geophysical Research Letters, v. 32, p. L03705). The direction of motion relative to the Milky Way’s cosmic drift governs the exposure to cosmic rays that result from a kind of ‘bow-shock’ ahead of the galaxy

Stellar motion through the Milky Way is semi-independent so that from time to time the Solar System may have been sufficiently close to regions of dense dust and gas that nurture the formation of super-massive stars. These huge objects quickly evolve to end in supernovae, proximity to which would have exposed life to ‘hard’ X- and  γ-rays and would be trigger for mass extinction, for instance by accompanying cosmic rays in destroying the ozone protection from UV radiation from the Sun.

The dynamism of the Earth and the resulting complexity of its surface processes makes it a poor place to look for physical signs of galactic influences. No so the Moon: for almost 4.5 billion years it has been a passive receptor for virtually anything that the cosmos could fling at it, and so geologically inert that its surface layers may well preserve a complete ‘stratigraphic’ record of all kinds of process. Should lunar landings with geological capabilities once more prove economically possible, or politically useful, that hidden history could be read.

Hominin updates

A new approach to 14C dating at the Oxford Radiocarbon Accelerator Unit at the University of Oxford UK, combined with detailed analysis of human teeth to distinguish fully modern human remains from those of Neanderthals has pushed back the date and pace of migration into Europe by people whose tools define the Aurignacian and Italian Uluzzian technologies. These are the earliest modern-human cultures found in Europe, but some of the tools are similar to those produced by Neanderthals (Châtelperronian culture), raising the possibility of transfer of technologies between the two groups. So, without confirmation from human remains of the anatomical affinities the would be doubts about using tools of these kinds to signify the presence at a site of full modern humans. Teeth found decades ago at caves in SW England and southern Italy prove, on detailed comparative study, to be from ‘moderns’ (Higham, T. And 12 others 2011. The earliest evidence for anatomically modern humans in northwestern Europe. Nature, v. 479, p. 521-524; Benazzi, S. And 13others 2011. Early dispersal of modern humans in Europe and implications for Neanderthal behaviour. Nature, v. 479, p. 525-528).The new carbon-isotope method  efficiently eliminates chemical contamination of material by post-fossilisation processes and so tend to increase the measured age of samples. The two studies produced exciting results: dates of occupation between 42-43 and 43-45 ka from SW England and southern Italy respectively. Together with results from other sites throughout central and southern Europe, the discovery shows that widespread colonisation was accomplished in three to five thousand years by migrants probably from the Levant, who may have travelled along three routes fanning out from the Bosporus in modern Turkey: along the Danube; along the Adriatic coast; from southern Greece to the ‘heel’ of Italy.

In early 2011 a group of archaeologists led by Simon Armitage of the University of Birmingham, UK reported stone tools from a cave in the United Arab Emirates for which they derived possible ages of 125, 95 and 40 ka (see Human migration in EPN for January 2011). The older dates were coeval with anatomically modern humans in the Levant, but the tools themselves showed features that could not be matched decisively with those from any other sites, including those in the Leant, though they most resembled collections from East and NE Africa. Armitage and colleagues suggested that the people who occupied the UAE cave had crossed the Red Sea at the time of the glacial maximum around 130 ka, at a time of unprecedented low sea level. A recent paper adds considerable weight to this idea (Rose, J.I. and 9 others 2011. The Nubian Complex of Dhofar, Oman: An African Middle Stone Age Industry in Southern Arabia at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0028239). Jeffrey Rose, also of the University of Birmingham, and colleagues from Ukraine, US, UK, Germany, the Czech Republic and Australia excavated site in Dhofar southern Oman, much closer to the Straits of Bab el Mandab than the UAE. Chert tools found in the area are of the Levallois type, specifically resembling closely those found widely in the Nile Valley of southern Egypt and northern Sudan, and in the Afar Depression of Ethiopia, in deposits dated between 128 to 74 ka. The Omani tools yielded an optically stimulated luminescence age of about 106 ka. This nicely confirms that Africans had moved far beyond the confines of their home continent by the last interglacial episode, with the route to South Asia open to them along the shores of the Persian Gulf and Indian Ocean. However, the route that they had taken could equally have been around the head of the Red Sea as across the Bab el Mandab.

Desert varnish: an outdoor canvas

Petroglyphs carved in desert varnish at the Va...
Petroglyphs in desert varnish near Las Vegas, Nevada, USA. Image via Wikipedia

Early occupants of semi-arid areas found a cultural use for what is one of geology’s greatest annoyances: desert varnish. Annoying because once developed it leaves an extremely durable brownish to black, shiny coating over rock surfaces: be they dunite, marble or quartzite, sandstone or granite, desert outcrops all look very much the same. You have to bash them unmercifully to see the true texture and mineralogy, and, except on images of thermally emitted infrared, remote sensing doesn’t help as the varnish has the same reflectance whatever the wavelength of radiation. Yet to the former inhabitants of dry lands – and latter day ‘taggers’ – desert varnish has been irresistible for millennia. Lightly peck away with a sharp pebble – and some ability to depict your thoughts – and you can leave an almost indelible sign that you and your ideas were at that very rock face: a petroglyph, picked out for all time in the manner of chalk on a blackboard. Even more spectacular, given an oversight of a varnished cobbly plain and it is possible to magnify your tag, or whatever petroglyphs once signified, a hundredfold or more. That happened on the famous Nazca Plain of Peru  and continues to do so in especially dry places in the south-western US, as around Lake Havasu City in Arizona. Varnish forms only on the exposed face of cobbles, the downward side remaining more or less the original rock’s colour; generally lighter. Turn over the cobbles in an organised way, with a degree of persistence as well as talent and you too can make your mark on Google Earth! (Do not pass this on to Banksy – it doesn’t hurt the ecosystem, but will annoy the authorities immensely).

Français : Lignes de Nazca au Pérou. Le contra...
Ancient art depicting a hummingbird on the Nazca Plain, Peru. Image via Wikipedia

For all this period of artistic endeavour, stretching back in some places to the Palaeolithic, it now seems that desert varnish also records how environments have changed as well as the religiosity, humour or downright egotism of its inhabitants (Dickerson, R. 2011. Desert varnish – nature’s smallest sedimentary formation. Geology Today, v. 27 (November-December issue), p. 216-219). As well as reviewing how the varnish forms (see also Desert varnish in EPN May 2008, in Subjects: GIS and Remote Sensing)., Dickerson flags-up the little-known fact that the minute layers produced as varnish imperceptibly develops record changes in environmental conditions – wet, dry and middling – and, moreover they can be dated precisely despite being extremely thin (e.g. Liu, T. & Broeker, W.S. 2008. Rock varnish microlamination dating of late Quaternary geomorphic features in the dry lands of wester USA. Geomorphology, v. 93, p. 501-523). Liu and Broeker were able to match variations in the colour of varnish layers with important climatic episodes of the Northern Hemisphere, such as the Younger Dryas and other warming-cooling, dry-wet shifts as far back as the Last Glacial Maximum. Their approach offers a chance of dating petroglyphs and thereby cultural changes during critical stages in the history of modern human migrations, occupations and abandonments, even when no artefacts or bones remain. That is because once made, petroglyphs gradually become varnished themselves.

Pan African Review

A terrane boundary close to the Nile in the Sudan, detected by radar from the Space Shuttle: the Keraf Suture. From NASA

Undoubtedly the best exposed and one of the biggest examples, the accretionary orogen of the Arabian-Nubian Shield (ANS) is a witness to the creation of a supercontinent from the remnants of an earlier one. At about 1 Ga, most of the Earth’s continental material was clumped together in the Rodinia supercontinent that existed for a quarter of a billion years. At a time of massive mantle upheaval that left most crust of that age affected by basaltic magmatism, in the form of lava flows and dyke swarms, Rodinia began to break up at 800 Ma to scatter continental fragments. Subduction zone accommodated this continental drift to form many ocean and continental-margin volcanic arcs. The ANS is a repository for many of these arcs which episodically accreted between earlier cratons to the west in Africa and those comprising Somalia and the present Indian subcontinent. Primarily the terranes are oceanic in origin and formed in the aftermath of the dismemberment of Rodinia, although a few slivers of older, reworked crust occur in Saudi Arabia and Yemen. Among the various components are ophiolites marking sutures and other major tectonic features of the orogen. The shape of the Shield is unlike that of any other major orogen of later times, for it shrinks from a width estimated at ~2000 km in Arabia to the north to vanish just south of the Equator in southern Kenya. This ‘pinched’ structure has suggested to some that the bulk of the new crust was forced laterally northwards when the African and Indian cratons collided, in the manner of toothpaste from a trodden-on tube.

Today the ANS is a harsh place, some off-limits to geologists either for political reasons or the sheer hostility and remoteness of the environment. Yet a picture has emerged, bit by bit, over the last 30 years. So a detailed review of the most extensive and varied part from 7° to 32°N and 26° to 50°E – in Egypt, Saudia Arabia, eastern Sudan, Eritrea, Yemen and northern Ethiopia is especially welcome (Johnson, P.R. et al. 2011. Late Cryogenian–Ediacaran history of the Arabian–Nubian Shield: A review of depositional, plutonic, structural, and tectonic events in the closing stages of the northern East African Orogen. Journal of African Earth Sciences, v. 61, p. 167-232). Peter Johnson himself compiled a vast amount of information during his career with the US Geological Survey Mission in Saudi Arabia and has blended the inevitably diverse ideas of his 7 co-workers – but by no means all the ideas that are in the literature. The result is a readable and well illustrated account of how the ANS assembled tectonically during times when a near-global glaciation took place, and the first macroscopic animals appear in the fossil record. Tillites and other glaciogenic rocks from the Marinoan ‘SnowBall’ occur from place to place in the ANS, as do banded iron formations that made a surprise return after a billion-year or longer absence in the Cryogenian Period . Coincidentally, glacial conditions returned to the region twice in Ordovician and Carboniferous to Permian times, forming distinctive, tectonically undisturbed sediments in the Phanerozoic cover that unconformably overlies the Neoproterozoic orogen.

Except in a few areas only recently explored, geologists have assiduously dated events in the ANS, showing nicely that all the basement rock formed after 800 Ma, and that orogenic events culminated before the start of the Cambrian period, although one or two unusual granites intruded as late as the Ordovician. The deformation is immense in places, with huge nappes, often strike-slip shear zones and exposure ranging from the lowest metamorphic grade to that in which water and granitic magma was driven from the lower Pan African crust. The range of exposed crustal levels stems partly from the tectonics, but owes a lot to the 2-3 km of modern topographic relief, unique to NE Africa and Arabia. Yet it is not uncommon to come upon delicate features such as pillowed lavas, conglomerates and finely laminated volcanoclastic tuffs. Following tectonic welding, more brittle deformation opened subsiding basins that contain exclusively sedimentary rocks derived from the newly uplifted crust, both marine and terrestrial in formation (basins of this type, in Eritrea and Ethiopia, unfortunately do not figure in the regional maps). Much of the ANS is currently the object of a gold rush, encouraged by a rising world price for the ‘inflation-proof’ comfort blanket provided by the yellow metal. Consequently, newcomers to the stampede will be well advised to mug-up on the regional picture of occurrences and gold-favourable geology provided in the review, and may be interested by other exploration possibilities for rare-earth metals and other rising stars on the London Metal Exchange, such as tin, which are often hosted in evolved granites, that stud the whole region.

Water sources and early migration from Africa

SeaWiFS collected this view of the Arabian Pen...
The Arabian Peninsula today. Image via Wikipedia

In March 2011 EPN reported in Human migration a puzzle relating to evidence for modern human occupation of Arabia on the southern shore of the Persian Gulf during the last Eemian interglacial at 125 and 95 ka. At that time sea level would have been as it is now, discouraging any attempt to cross the Red Sea via the Straits of Bab el Mandab; a widely suggested short-cut from East Africa to the rest of the world. Around 125 ka modern humans were making a living from coastal resources in Eritrea, leaving abundant stone tools in shoreline deposits at the head of the Gulf of Zula, and in the Sodmein Cave on Egypt’s Red Sea coast. They had also reached the famous Qafzeh and Skhul caves of Mount Carmel in today’s Israel around 100 thousand years ago. A route out of Africa through the Levant has not been widely favoured and the humans of Qafzeh and Skhul have been suggested to have reached a geographic cul-de-sac with no eastward exit because of the aridity of the Arabian Peninsula. Yet once in the Levant they could have skirted the desert interior by following the east coast of the Red Sea, and ‘strandloped’, as Jonathan Kingdon has dubbed following the coastline. But continuous access to fresh water would still have been essential.

The shores of the Red Sea preserve many examples of uplifted coral reefs, indeed signs of human presence in Eritrea occur in such a terrace. Being extremely porous, reef terraces are potential aquifers and a sign that they may have sourced freshwater springs is the conversion of the intricate coral skeletons from one form of calcium carbonate to another; original aragonite changes to calcite in the presence of fresh water, a complete replacement being estimated to take a thousand years of continual contact with fresh water. This change allowed Boaz Lazar and Mordechai Stein of the Hebrew University of Jerusalem and the Geological Survey of Israel to check for the presence of freshwater coastal springs in the past (Lazar, B. & Stein, M. 2011. Freshwater on the route of hominins out of Africa revealed by U-Th in Red Sea corals. Geology, v. 39, p. 1067-1070). Their test site was a series of uplifted reefs near Aqaba on the Red Sea coast of Jordan. The authors determined variations in the 230Th/238U ratio in the reefs relative to that of 234U/238U and showed open-system addition of 230Th and 234U during the aragonite to calcite recrystallization, that results in an isotopic compositional trend charting the timing of any alteration. Thus, the original age of reef terraces can be backtracked, revealing at Aqaba successively higher terraces formed recently and at 120, 142 and  190 ka. The oldest of the terraces seems to have been flooded with fresh water at the start of the Eemian interglacial (~140 ka), and may have been a source of springs that would have served the earliest human travellers well. It remains to use Lazar and Stein’s approach at other reef terraces along the postulated northern exit route for the earliest modern human emigrants from Africa and, more important, to find traces of their passage.

Added 21 December 2011. The likely route for leaving Africa got a push towards the Bab el Mandab with publication of evidence for a greener south Arabia at several times in the late Pleistocene (Rosenberg, T.M. and 8 others 2011. Humid periods in southern Arabia: Windows of opportunity for modern human dispersal. Geology, v. 39, p. 1115-1118). On the eastern edge of the now hyper-arid Rub al Khali are a series of former lakes with thin sediments. When first discovered they yielded radiocarbon ages of fossil molluscs of around 40 to 20 and 10.5 to 6 ka. However recent dating using optically stimulated luminescence (OSL) of the dune sands between which occur lacustrine muds and silts suggest that the lakes were water-filled  for lengthy periods  before those ages – radiocarbon dating can be reset to younger ages by precipitation of carbonates on older  fossils.  The OSL results show wet periods around 80, 100 and 125 ka, suggesting that around these times the Intertropical Convergence Zone was pulled northwards so taking seasonal monsoon rains well into the Arabian Peninsula. They tie in nicely with a variety of other parameters, including the timing of lowstands of the Red Sea. This created episodes a few thousand years long that would have been conducive to humans living there and passing through en route to Asia around eastern Arabia and perhaps to the Levant up the west side of the sub-continent. Potential occupancy was shut off by long arid periods, which might have allowed only pulses of migration. Had such episodic diffusion occurred it might have left a record in human DNA that ongoing and planned population genetic research may reveal.

South Asian arsenic update

Skin lesions from arsenic poisoning in Bangladesh
The first signs of chronic arsenic poisoning: skin keratoses. Image by waterdotorg via Flickr

That groundwater in West Bengal, India was polluted with arsenic to such levels that symptoms of poisoning had become endemic was reported by Depankar Chakraborti in 1983, leading to his being branded a ‘panic monger’ by the Indian authorities. The news broke internationally in 1993 as the now infamous tragedy in neighbouring Bangladesh emerged. Means of mitigating the effects – lesions or keratoses and skin discoloration, and later increases in incidence of several forms of cancer – and ideas of how the pollution had occurred had to await proper geochemical analyses of well waters and logging of the mainly alluvial sediments from which water was being withdrawn; another 8 years went by. Reports of arsenicosis began to emerge from other areas of alluvial sediments in SE Asia, revealing by far the worst mass poisoning in history and the likelihood that the lives of millions would be blighted by what Bangladeshis dubbed ‘the Black  Rain’ from the resemblance of the characteristic skin lesions to drops of black water.

Thanks principally to the work of water engineer Peter Ravenscroft with other geochemists, the source of arsenic in groundwater was narrowed down to the effect of reducing conditions in grey, carbonaceous sandstones and peats on the mineral goethite, an iron oxy-hydroxide that forms the main colorant in oxidised sediments and whose loose structure normally encourages the mopping-up by surface adsorption of a wide spectrum of dissolved ions, including those of arsenic. Goethite readily breaks down under reducing conditions, and when that happens all the adsorbed material is released into solution. The upper parts of the alluvial and deltaic sediments in the lower reaches of the Ganges and Brahmaputra rivers contain abundant organic remains picked up when vegetation burgeoned during the Holocene, which mixed with goethite-coated sand grains derived from erosion in the Himalayan stretches of the rivers. Purely natural sedimentary and hydrogeological processes created the dreadful plight of villagers. The terrible irony was that before the 1980s there were no signs of arsenicosis, yet mortality, especially of under-fives, was very high due to water-borne pathogens in surface water supplies. Indian and Bangladeshi authorities and UN agencies waged a campaign to sink shallow wells for drinking water rather than relying on river and pond supplies. At first rural people resisted the change since they regarded water from wells as the ‘Devil’s water’, but as infant mortality began to fall, the resistance turned to rapid construction nationwide of wells, both public and private. A few years later came the ‘Black Rain’.

In the attempts to mitigate the arsenicosis plague, filters containing adsorptive materials, including goethite, were installed on pumps. However, the geochemists showed that in the deeper wells there were consistently low concentrations of arsenic in sediments that were brown-coloured due to prevailing oxidising conditions and the presence of goethite. Although arsenic was present in the sediments it was safely locked in the goethite coatings of sand grains. Steadily major public supplies were transferred to deep, high-yield wells. Alluvial and deltaic deposits are generally highly permeable, so it was feared that as the deeper wells were pumped arsenic-rich water from the reduced shallow sediments would replace the safe groundwater. Thankfully, it seems that is not likely to be a problem (Radloff, K.A. and 12 others 2011. Arsenic migration to deep groundwater in Bangladesh influenced by adsorption and water demand. Nature Geoscience, v. 4, p. 793-798). The study injected As-bearing groundwater into a deep aquifer and monitored its arsenic concentration over time, once in place. Within a day, the concentration of dissolved arsenic fell by 70% and by 5 days had fallen below recommended maximum levels for drinking water; a dramatic demonstration of the clean-up power of even minute films of goethite in sediments, for that seems the only explanation for the fall. The US-Bangladeshi team verified this by testing samples of the deeper sediments from drill cuttings. They mixed highly contaminated groundwater with the cuttings, to find that arsenic sorption over  about a week was extremely high (~40mg kg-1).

Water well in Bangladesh. From http://www.flickr.com/photos/waterdotorg/3696304044

Rather than just publishing their reassuring findings, the team input them to hydrogeological models of the Bengal Basin, varying hypothetical pumping rates to assess the changes in deep-groundwater chemistry over time due to downward migration of the highly polluted near-surface waters. Sure enough, the As-rich waters would end up in the deep aquifer eventually to overwhelm the sorptive capacity of its goethite content; arsenic would once again enter well supplies. However, if deep extraction was limited to drinking water by limiting pumping for irrigation to intermediate depths, safe limits could be sustained theoretically for a thousand years or more, except in some areas especially prone downward intrusion of polluted shallow groundwater. (Use of highly contaminated shallow groundwater for irrigation would simply transfer the problem to crops.) Clearly, monitoring is obligatory, but one hopes this important study does resolve the horrifying plight faced by so many people in catchments fed by Himalayan waters.

Fracking check list

Bergung der Opfer des Grubenunglücks
Aftermath of the 1906 mine explosion at Courrières, northern France; the largest mining disaster in Europe with 1099 fatalities. Image via Wikipedia

Britain is on the cusp of a shale-gas boom (see Britain to be comprehensively fracked? : EPN 14 October 2011) and it is as well to be prepared for some potential consequences. In extensively fracked parts of the US – the states of New York, Pennsylvania, Texas and Colorado – there are reports of water taps emitting roaring flames after dissolved methane in groundwater ignites. This is largely due to common-place household water supplies from unprocessed groundwater, which are rare in Britain. But there are other hazards (Mooney, C. 2011. The truth about fracking. Scientific American, v. 305 (Nov 2011), p. 62-67) that have enraged Americans in affected areas, which are just as likely to occur in Britain. In fact the nature of shale-gas exploitation by horizontal drilling beneath large areas poses larger threats in densely populated area, as the people of Blackpool have witnessed in the form of small earthquakes that the local shale-gas entrepreneur Cuadrilla admit as side effects of their exploratory operations .

Chris Mooney succinctly explains the processes involved in fracking shale reservoirs; basically huge volumes of water laced with a cocktail of hazardous chemicals and sand being blasted into shales at high pressure to fracture the rock hydraulically and create pathways for natural gas to leak to the wells. One risk is that this water has to be recovered and stored in surface ponds for re-use. About 75% returns to the surface and also carries whatever has been dissolved from the shales, which can be extremely hazardous. By definition a shale containing hydrocarbons creates strongly reducing conditions, which in turn can induce several elements to enter solution as well as easily dissolved salts; for instance divalent iron (Fe2+) is highly soluble, whereas more oxidised Fe3+ is not, so waters having passed through gas-rich shales will be iron-rich. But that is by no means the worst possibility; one of the most common iron minerals in sedimentary rocks is goethite (FeOOH), which adsorbs many otherwise soluble elements and compounds. In reducing conditions goethite can break down to release its adsorbed elements, among which is commonly arsenic. The blazing faucet hazard results from hydrocarbon gases leaking through imperfectly sealed well casings to enter shallow groundwater, where the gases can also create reducing conditions and release toxic elements and compounds into otherwise pure groundwater by dissolution of ubiquitous goethite, as in the infamous arsenic crisis of Bangladesh and adjoining West Bengal in India where natural reducing conditions do the damage.

What is not mentioned in the Scientific American article is the common association of hydrogen sulfide gas with petroleum, produced from abundant sulfate ions in formation water by bacteria that reduce sulfate to sulfide in the metabolism. This ‘sour gas’, as it is known in the oil industry, is a stealthy killer: at high concentrations it loses its rotten-eggs smell and in the early days of the petroleum industry killed more oil workers than did any other occupational hazard. Visit the spa towns of Harrogate in Yorkshire and Strathpeffer in northern Scotland and sample their waters for examples of what Carboniferous and Devonian gas-rich shales produce quite naturally: noxious stuff of questionable efficacy. The environmental effects of such natural seepage from gas-rich rocks tell a cautionary tale as regards fracking. The highly reducing cocktail of hydrocarbon and sulfide gases in rising, mineral-rich formation water kills the microbiotic symbionts that are essential to plant root systems for nutrient uptake die and so too do trees. The onshore Solway Basin of Carboniferous age in NW England illustrates both points, having many chalybeate springs as the sulfide- and iron-rich waters are euphemistically known and also a strange phenomenon in many of the deep valleys cut by glacial melt waters as land rose following the last glacial maximum. Once trees reach a certain height – and correspondingly deep root systems – they die, to litter the valley woodland with large dead-heads.  Also leaves on smaller trees turn to their autumnal colours earlier than on higher ground. Both seem to be due to minor gas seepages from thick sale sequences in the depths of the sedimentary basin. Indeed, both are botanical indicators to the hydrocarbon explorationist.

To recap, a common size of a fracking operation using several horizontal wells driven from a single wellhead is 4km in diameter entering gas-rich shales at up to 2 km depth. Each well can generate fractures of a hundred metres or more in the shales and surrounding rocks, as they have to for commercial production. In Britain, most of the sites underlain by shales with gas potential are low-lying agricultural- or urban land. The producing rock in the Blackpool area is the Middle Carboniferous Bowland Shale that lies beneath the Coal Measures of what was formerly the Lancashire coalfield, now a patchwork of expanding urban centres. On 23 May 1984 an explosion occurred in Abbystead, Lancashire at an installation designed to pump winter flood water between the rivers Lune and Wyre through a tunnel beneath the Lower to Middle Carboniferous Bowland Fells. The Abbystead Disaster coincided with an inaugural demonstration of the pumping station to visitors, of whom 16 were killed and 22 injured. Methane had escaped from Carboniferous shales to build up in the flood-balancing  tunnel soon after its construction. Methane build-ups were by far the worst hazard throughout the history of British coal mining, thousands dying and being maimed as a result of explosions. One of the largest death tolls in British coal-mining history was 344 miners at Hulton Colliery in Westhoughton, Lancashire in 1910 after a methane explosion; the methane may well have escaped from the underlying Bowland Shales.

Snippets on human evolution

Image copyright held by author, Chris Henshilw...
Artifacts from the Blombos Cave, South Africa, including deliberately etched block of hematite Image by Chris Henshilwood via Wikipedia

The news that most humans outside of Africa carry fragments of DNA that match with those of Neanderthals and the mysterious Denisovan archaic humans ( see Yes, it seems that they did… and Other rich hominin pickings in the May 2010 issue of EPN) has entered into popular culture; or soon will have! Similar dalliances with the ‘older folk’ seem also to have occurred among those humans who remained in Africa (Hammer, M.F. et al. 2011. Genetic evidence for archaic admixture in Africa. Proceedings of the National Academy of Sciences, v. 108, p. 15123-15128). The DNA of three groups in West Africa who maintain a hunter-gatherer lifestyles show regions that are not involved in coding for proteins that differ from the African norm. This suggests mating with an entirely separate and unknown group of hominins – probably archaic forms of humans – that produced fertile offspring, probably around 35 thousand years ago. The find spurred re-evaluation of bones with a mix of archaic and modern features that were discovered in a Nigerian cave in the 1960s (Harvati, K. et al. 2011. The Later Stone Age Calvaria from Iwo Eleru, Nigeria: Morphology and Chronology. PLoS ONE, v.  6: e24024. doi:10.1371/journal.pone.0024024). The study confirms that the skulls are outside the fully modern human range, but display a close similarity with Neanderthal and H. erectus. The big surprise is that U-Th dating suggests they are quite recent, around 16 ka. The stage seems set for nor only a burst of exploration for human remains of less antiquity than early hominins but a ‘paradigm shift’ in our view of what constitutes a human species.

See also: Gibbons, A. 2011, African data bolster new view of modern human origins. Science, v. 334, p. 167.

Another interesting link with archaic humans who had the closest of relationships with some of our ancestors is that their union may have bolstered the resistance of migrants from Africa to Eurasian pathogens (Abi-Rached, L. and 22 others 2011. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science, v. 334, p. 89-94). The focus was on the human leucocyte antigen (HLA) group that is a vital part of our immune system in the form of ‘killer cells’. Part of modern Eurasian DNA that codes for the group (HLA-B*73 allele) appears in the Neanderthal and Denisovan genomes; indeed more than half the HLA alleles of modern Eurasians may have originated in this way, and have also been introduced into Africans subsequently.

Also at the front line of genomic research into human origins, DNA sequenced from a lock of hair given to an Edwardian anthropologist by a native Australian turns out to have an extreme antiquity compared with that of other Eurasian people descended from African migrants (Rasmussen, M. and 57 others. An aboriginal Australian genome reveals separate human dispersals into Asia. Science, v. 334, p. 94-98). The unique aspects of the Australian genome signify separation of a group of individuals from the main African population around 62-75 thousand years ago; significantly earlier than and different from ‘run of the mill’ migrants from whom modern Asians arose at between 25 to 38 ka. There is little doubt that native Australians are descended from the pioneers who first diffused from Africa either by crossing the Straits of Bab el Mandab or taking another route and they moved more speedily across southern Asia than other waves made possible by climate change and sea-level falls following the Eemian interglacial of 133-115 ka.

Despite the lingering Eurocentrist view that somehow fully modern human consciousness sprang into being at the time the famous French and Spanish cave art was painted, around 30 ka, increasing evidence points to an African origin for a sense of aesthetics and the ability to express it. The latest is the discovery of a 100 ka ‘paint box’ in a South African coastal cave (Henshilwood, C.S. et al. 2011. A 100,000-year-old ochre-processing workshop at Blombos Cave, South Africa. Science, v. 334, p. 219-223). The material consists of two large abalone shells containing traces of red and orange ochre, together with a hammer stone and grinder with adhering ochre, and fat-rich bones which ground-up would have produced a binder for the ochre. No art occurs in the cave and it might be supposed that the pigments were intended for face- or body adornment.

The ultra-deep carbon cycle

A scattering of "brilliant" cut diam...
Image via Wikipedia

The presence of diamonds in the strange, potassium-rich, mafic to ultramafic igneous rocks known as kimberlites clearly demonstrates that there is carbon in the mantle, but it could have come from either biogenic carbon having moved down subduction zones or the original meteoritic matter that accreted to form the Earth. Both are distinct possibilities for which evidence can only be found within diamonds themselves as inclusions. There is a steady flow of publications focussed on diamond inclusions subsidised to some extent by companies that mine them (see Plate tectonics monitored by diamonds in EPN, 2 August 2011). The latest centres on the original source rocks of kimberlites and the depths that they reached (Walter, M.J. and 8 others 2011. Deep mantle cycling of oceanic crust: evidence from diamonds and their mineral inclusions. Science, v. 334, p. 54-57). The British, Brazilian and US team analysed inclusions in diamonds from Brazil, finding assemblages that are consistent with original minerals having formed below the 660 km upper- to lower-mantle seismic boundary and then adjusting to decreasing pressure as the kimberlite’s precursor rose to melt at shallower levels. The minerals – various forms of perovskite stable at deep-mantle pressures – from which the intricate composites of several lower-pressure phases exsolved suggest the diamonds originated around 1000 km below the surface; far deeper than did more common diamonds. Moreover, their geochemistry suggests that the inclusions formed from deeply subducted basalts of former oceanic crust.

Previous work on the carbon isotopes in ‘super-deep’ diamonds seemed to rule out a biogenic origin for the carbon, suggesting that surface carbon does not survive subduction into the lower mantle. In this case, however, the diamonds are made of carbon strongly enriched in light 12C relative to 13C, with δ13C values of around -20 ‰ (per thousand), which is far lower than that found in mantle peridotite and may have been subducted organic carbon. If that proves to be the case it extends the global carbon cycle far deeper than had been imagined, even by the most enthusiastic supporters of the Gaia hypothesis.

Low-lying Tibet before India-Asia collision

The Tibetan plateau lies between the Himalayan...
The semi-arid Tibetan Plateau from spaceImage via Wikipedia

The vast Tibetan Plateau at an average elevation of 4500 m is a major influence on the climate of Asia, being central to the annual monsoons, as well as one the world’s largest continental tectonic features. When it formed is crucial in palaeoclimatic modelling as well as to geomorphologists and structural geologists. Whether or not it was present before the Indian subcontinent collided with Asia at 50 Ma has been the subject of perennial debate; it could have formed during the more or less continual accretion of terranes to southern Eurasia since the Jurassic Period. A novel approach to timing uplift of Tibet is obviously needed to resolve the controversies, and that may have been achieved (Hetzel, R. et al. 2011. Peneplain formation in southern Tibet predates the India-Asia collision and plateau uplift.  Geology, v.39, p.983-986). North of Lhasa is an area of coincident small plateaus at around 5200-5400 m into which are cut valleys a few hundred metres. It has the hallmarks of a peneplain stripped to the base level of erosion, and developed on Cretaceous granites. The German-Chinese-South African team applied a range of geochronological techniques to date the emplacement of the granites and their cooling history. U/Pb dating shows the granites to have crystallised between 120 to 110 Ma; U-Th/He dating of zircons in them indicate their cooling from 180° to 60°C between 90 and 70 Ma; apatite  U-Th/He and fission-track dating show that the granites experienced surface temperatures by around 55 Ma during a period of erosion at a rate of 200-400 m Ma-1. The clear inference is that an area >10 000 km2 became a peneplain by the end of the Palaeocene, to be unconformably overlain by Eocene continental redbeds.

By the Eocene the northern Lhasa Block had become a low-elevation plain from which a vast amount of sediment had been removed to be deposited elsewhere – Palaeocene and Eocene sediments are not common throughout the whole Tibetan Plateau. This is strong evidence that uplift of the Plateau only began after the India-Asia collision during the Eocene. Despite that and the erosion that would have taken place, much of the peneplain remains; given resistant bedrock peneplains can be very long-lived.

Seafloor mud cores and the seismic record

Chikyu
Japan's deep-sea Drilling Vessel "CHIKYU" Image via Wikipedia

The most important factors in attempting to assess risk from earthquakes are their frequency and the time-dependence of seismic magnitude. Historical records, although they go back more than a millennium, do not offer sufficient statistical rigor for which tens or hundreds of thousand years are needed. So the geological record is the only source of information and for most environments it is incomplete, because of erosion episodes, ambiguity of possible signs of earthquakes and difficulty in precise dating; indeed some sequences are extremely difficult to date at all with the resolution and consistency that analysis requires. One set of records that offer precise, continuous timing is that from ocean-floor sediment cores in which oxygen isotope variations related to the intricacies of climate change can be widely correlated with one another and with the records preserved in polar ice cores. For the past 50 ka they can be dated using radiocarbon methods on foraminifera shells The main difficulty lies in finding earthquake signatures in quite monotonous muds, but one kind of feature may prove crucial; evidence of sudden fracturing of otherwise gloopy ooze (Sakagusch, A. et al. 2011. Episodic seafloor mud brecciation due to great subduction zone earthquakes. Geology, v.39, p. 919-922).

The Japanese-US team scrutinised cores from the Integrated Ocean Drilling Program (IODP) that were drilled 5 years ago through the shallow sea floor above the subduction zone associated with the Nankai Trough to the SE of southern Japan. Young, upper sediments were targeted close to one of the long-lived faults associated with the formation of an accretionary wedge by the scraping action of subduction. Rather than examining the cores visually the team used X-ray tomography similar to that involved in CT scans, which produce precise 3-D images of internal structure. This showed up repeated examples of sediment disturbance in the form of angular pieces of clay set in a homogeneous mud matrix separated by undisturbed sections containing laminations. The repetitions are on a scale of centimetres to tens of centimetres and were dated using a combination of 14C and 210Pb dating (210Pb forms as a stage in the decay sequence of 238U and decays with a half-life of about 22 years, so is useful for recent events). The youngest mud breccia gave a 210Pb age of AD 1950±20, and probably formed during the 1944 Tonankai event, a great earthquake with Magnitude 8.2. Two other near-surface breccias gave 14C ages of 3512±34 and 10626±45 years before present. These too probably represent earlier great earthquakes as it can be shown that mud fracturing and brecciation by ground shaking needs accelerations of around 1G, induced by earthquakes with magnitudes greater than about 7.0. So, not all earthquakes in a particular segment of crust would show up in seafloor cores, most inducing turbidity flow of surface sediment, but knowing the frequency of the most damaging events, both by onshore seismicity and tsunamis, could be useful in risk analysis. In its favour, the method requires cores that penetrate only about 10 m, so hundreds could be systematically collected using simple piston coring rigs where a weighted tube is dropped onto the sea floor from a small craft.

Mercury: anything new?

Full color image of from first MESSENGER flyby
Mercury from an earlier MESSENGER fly-by. Image via Wikipedia

The Sun’s nearest planet, Mercury, seems odd in some ways; for instance, it has a proportionately larger metallic core than any other planet. That feature has led some to suggest that somehow most of any original silicate mantle was lost. One possibility is that its proximity to the Sun resulted in Mercury’s surface being ablated. Another looks to a huge collision with another body that tore off much of the mantle; similar to the event that the chemical commonality of the Earth and Moon suggests early in Earth history. Both processes should have left a distinct geochemical signature on the surface of Mercury: some kind of residue of solar ablation or evidence of fractional crystallisation of a magma ocean, such as the feldspar-rich lunar highlands that are probably formed of crystals that floated as such a planetary silicate melt cooled and evolved. The seeming strangeness of Mercury helped underpin a well-equipped un-crewed mission, going by the acronym MESSENGER, that finally settled into Mercury orbit in March 2011 after a planned ‘yo-yoing’ path since launch in August 2004 that took it back and forth between Earth, Mercury and Venus in its early stages. Early analysis of results from the now permanent orbit appeared in the 30 September 2011 issue of Science.

MESSENGER carries several remote sensing instruments: a stereo imaging device to map landforms, and topography; a laser altimeter to back the stereo imager; a visible to short-wave infrared spectrometer to map variations in surface spectra and minerals; gamma-ray spectrometry to map distributions of naturally radioactive isotopes and emissions from other elements triggered by high-energy cosmic ray bombardment; using the Sun as a source of gamma- and X-rays to cause a variety of elements to emit lower energy X-rays – a variant of X-ray fluorescence spectrometry that is a workhorse of lab geochemistry.

The earlier Mercury fly-bys and previous missions clearly showed that its surface is heavily cratered but possesses areas resurfaced by lavas that obliterate older cratering. A little like the lunar maria in age and appearance, these smooth terrains show evidence of accumulations up to a kilometre thick formed by repeated lava flows (Head, J.W. and 25 others, 2011. Flood volcanism in the northern high latitudes of Mercury revealed by MESSENGER. Science, v. 333, p. 1853-1855). As regards the age of these major volcanic features, all that can be said is that they post-date the largest impacts, such as the huge Caloris Basin, and are more sparsely peppered with younger craters. Intriguingly, floors of some of the craters show clusters of small depressions and pits surrounded by light-coloured material of some kind, suggested to be solids condensed from gases that emerged from below (Blewett, D.T. and 17 others 2011. Hollows on Mercury: MESSENGER evidence for geologically recent volatile-related activity. Science, v. 333, p. 1856-1859). While it is only possible to assign youth of these features relative to the craters in which they occur, they indicate an underlying source of volatiles; a factor weighing against previous accounts of Mercury’s evolution by either solar ablation or giant impact.

Considerably more interesting – at least to me – are the results from the geochemically oriented instruments. Calcium, magnesium, aluminium and silicon estimates by the XRF-like instrument present not the slightest evidence for a feldspar-rich component of the early crust akin to the lunar highlands; another blow for the giant-impact and magma-ocean hypotheses. Mercury’s surface seems to be similar in composition to the most ancient terrestrial lavas: Mg-rich mafic to ultramafic komatiites, compared with the more iron-rich tholeiites of the lunar maria (Nittler, L.R. and 14 others. The major-element composition of Mercury’s surface from Messenger X-ray spectrometry. Science, v. 333, p. 1847-1850). They are ten-times more enriched in sulfur than surface rocks on the Earth or Moon, though iron content seems too low to accommodate it in minerals such as pyrite (FeS2). High sulfur content could point to an origin for Mercury from accretion of highly reduced material in the solar nebula, the Earth-Moon system being broadly more oxidised. Gamma-ray spectrometry to analyse the abundances of potassium, uranium and thorium (Peplowski, P.N. and 16 others. Radioactive elements on Mercury’s surface from MESSENGER: implications for the planet’s formation and evolution. Science, v. 333, p. 1850-1852) doesn’t serve previous ideas about the planet’s history either. Potassium, which is moderately volatile, is too high relative to more refractory uranium and thorium to support any notion of solar ablation of the surface, but the U, Th and K proportions are roughly like those of the Earth’s oceanic crust. One of the plots shows K-Th relationships for supposed meteorites from Mars and the extensive gamma-ray data from Mars itself, in which few of the meteorites fall in the K-Th ‘cloud’ for the Martian surface: now there’s a thing….

It must be emphasised that the geochemical results are but a fraction of what should eventually emerge from these powerful instruments. However, these early data place Mercury in much the same envelope as the other rock worlds of the Inner Solar System (Kerr, R.A. 2011. Mercury looking less exotic, more a member of the family. Science, v. 333, p. 1812).