An evolutionary bottleneck and the emergence of Neanderthals, Denisovans and modern humans

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The genetic diversity of living humans, particularly among short, repetitive segments of DNA, is surprisingly low. As they are passed from generation to generation they have a high chance of mutation, which would be expected to create substantial differences between geographically separated populations. In the late 1990s and early 2000s some researchers attributed the absence of such gross differences to the human gene pool having been reduced to a small size in the past, thereby reducing earlier genetic variation as a result of increased interbreeding among survivors. They were able to assess roughly when such a population ‘bottleneck’ took place and the level to which the global population fell. Genetic analysis of living human populations seemed to suggest that around 74 ka ago the global human population fell to as little as 10 thousand individuals. A potential culprit was the catastrophic eruption of the Toba supervolcano in Sumatra around that time, which belched out 800 km3 of ash now found as far afield as the Greenland and Antarctic ice caps. Global surface temperature may have fallen by 10°C for several years to decades. Subsequent research has cast doubt on such a severe decline in numbers of living hummans; for instance archaeologists working in SE India found much the same numbers of stone tools above the Toba ash deposit as below it (see: Toba ash and calibrating the Pleistocene record: December 2012). Other, less catastrophic explanations for the low genetic diversity of modern humans have also been proposed. Nevertheless, environmental changes that placed huge stresses on our ancestors may repeatedly have led to such population bottlenecks, and indeed throughout the entire history of biological evolution.

An improved method of ‘back-tracking’ genetic relatedness among living populations, known as fast infinitesimal time coalescence or ‘FitCoal’, tracks genomes of individuals back to a last common ancestor. In simple language, it expresses relatedness along lineages to find branching points and, using an assumed mutation rate, estimates how long ago such coalescences probably occurred. The more lineages the further back in time FitCoal can reach and the greater the precision of the analysis. Moreover it can suggest the likely numbers of individuals, whose history is preserved in the genetics of modern people, who contributed to the gene pool at different branching points. Our genetics today are not restricted to our species for it is certain that traces of Neanderthal and Denisovan ancestry are present in populations outside of Africa. African genetics also host ‘ghosts’ of so-far unknown distant ancestors. So, the FitCoal approach may well be capable of teasing out events in human evolution beyond a million years ago, if sufficient data are fed into the algorithms. A team of geneticists based in China, Italy and the US has recently applied FitCoal to genomic sequences of 3154 individual alive today (Hu, W.and 8 others 2023. Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition. Science, v. 381, p. 979-984; DOI I: 10.1126/science.abq7487). Their findings are startling and likely to launch controversy among their peers.

Their analyses suggest that between 930 and 813 ka ago human ancestors passed through a population bottleneck that involved only about 1300 breeding individuals. Moreover they remained at the very brink of extinction for a little under 120 thousand years. Interestingly, the genetic data are from people living on all continents, with no major differences between the analyses for geographically broad groups of people in Africa and Eurasia. Archaeological evidence, albeit sparse, suggests that ancient humans were widely spread across those two continental masses before the bottleneck event. The date range coincides with late stages of the Mid-Pleistocene climatic transition (1250 to 750 ka) during which glacial-interglacial cycles changed from 41 thousand-year periods to those that have an average duration of around 100 ka. The transition also brought with it roughly a doubling in the mean annual temperature range from the warmest parts of interglacials to the frigid glacial maxima: the world became a colder and drier place during the glacial parts of the cycles.

Genomes for Neanderthals and Denisovans suggest that they emerged as separate species between 500 and 700 ka ago. Their common ancestor, possibly Homo heidelbergensis, H. antecessor or other candidates (palaeoanthropologists habitually differ) may well have constituted the widespread population whose numbers shrank dramatically during the bottleneck. Perhaps several variants emerged because of it to become Denisovans, Neanderthals and, several hundred thousand years later, of anatomically modern humans. Yet it would require actual DNA from one or other candidate for the issue of last common ancestor for the three genetically known ‘late’ hominins to be resolved. But Hu et al. have shown a possible means of accelerated hominin evolution from which they may have emerged, at the very brink of extinction.

Oxygen-isotope record and global temperature changes over the last 5 million years, green lines showing the times dominated by 41 and 100 ka climatic cycles. The mid-Pleistocene climatic transition is shown in pink (Credit: Robert A Rohde)

There is a need for caution, however. H. erectus first appeared in the African fossil record about 1.8 Ma ago and subsequently spread across Eurasia to become the most ‘durable’ of all hominin species. Physiologically they seem not to have evolved much over at least a million years, nor even culturally – their biface Acheulean tools lasted as long as they did. They were present in Asia for even longer, and apparently did not dwindle during the mid-Pleistocene transition to the near catastrophic levels as did the ancestral species for living humans. The tiny global population suggested by Hu et al. for the latter also hints that their geographic distribution had to be very limited; otherwise widely separated small bands would surely have perished over the 120 ka of the bottleneck event. Yet, during the critical period from 930 to 813 ka even Britain was visited by a small band of archaic humans who left footprints in river sediments now exposed at Happisburgh in Norfolk. Hu et al. cite the scarcity of archaeological evidence from that period – perhaps unwisely – in support of their bottleneck hypothesis. There are plenty of other gaps in the comparatively tenuous fossil and archaeological records of hominins as a whole.

The discovery of genetic evidence for this population bottleneck is clearly exciting, as is the implication that it may have been the trigger for evolution of later human species and the stem event for modern humans. Hopefully Hu et al’s work will spur yet more genetic research along similar lines, but there is an even more pressing need for field research aimed at new human fossils from new archaeological sites.

See also: Ashton, N. & Stringer, C. 2023. Did our ancestors nearly die out? Science (Perspectives), v. 381, p. 947-948; DOI: 10.1126.science.adj9484.

Ikarashi, A. 2023. Human ancestors nearly went extinct 900,000 years ago. Nature, v. 621; DOI: 10.1038/d41586-023-02712-4

Di Vicenzo, F & Manzi, G. 2023. An evolutionary bottleneck and the emergence of Neanderthals, Denisovans and modern humans. Homo heidelbergensis as the Middle Pleistocene common ancestor of Denisovans, Neanderthals and modern humans. Journal of Mediterranean Earth Sciences, v, 15, p. 161-173; DOI: 10.13133/2280-6148/18074

When and why did the North American Pleistocene megafauna collapse?

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The US city of Los Angeles, originally known as El Pueblo de Nuestra Señora la Reina de los Ángeles (The Town of Our Lady the Queen of the Angels), was founded in 1781 by 44 Spanish settlers. It remained a small cattle-centred town after the annexation of California from Mexico by the USA in 1847. Once it was reached by the transcontinental Southern Pacific railroad in 1876 it had the potential for growth. But it took the discovery of oil within its limits in 1892 for its population to increase rapidly. The Los Angeles City Oil Field became the top producer in California with 200 separate oil companies crammed cheek by jowl by 1901. Now only one remains, producing just 3.5 barrels per day. That crude oil was there for the taking was pretty obvious as bitumen seeps had long been exploited by native people and the original Spanish colonists. The oilfield was developed near one such seep: the Rancho La Brea tar pits.

Rancho La Brea tar pit and derricks of the Los Angeles City Oil Field in 1901

By 1901 perfectly preserved bones of a huge variety of animals – 231 vertebrate species – as well as plants and invertebrates began to be collected from the continually roiling pond of bitumen. Thousands of specimens have been collected since then, both predators and prey of all sizes. Famous for mastodons and sabre-toothed cats, La Brea is a repository of almost the entire western Californian fauna through much of the Late Pleistocene: before about 100 ka the area lay beneath the Pacific Ocean. Tar pits are traps for unwary animals of any kind, especially as shallow water often hides the danger. Carnivores seeking easy, abundant food end up trapped too.

Because of the anaerobic nature of bitumen, bacterial decay is suppressed. Many of the bones still contain undegraded collagen: the most abundant protein in mammals, which can be dated using the radiocarbon method. So, despite the lack of stratigraphy in the tar pits, it is possible to track the history of the ecosystem by painstaking dating of individual fossils (OKeefe, F.R and 18 others 2023. Pre–Younger Dryas megafaunal extirpation at Rancho La Brea linked to fire-driven state shift. Science, v. 381, article eabo3594; DOI: 10.1126/science.abo3594). Robin OKeefe and colleagues dated 169 specimens of eight large mammal species most commonly found in the bitumen: sabre-toothed cat (Smilodon fatalis); dire wolf (Aenocyon dirus); coyote (Canis latrans); American lion (Panthera atrox); ancient bison (Bison antiquus); western horse (Equus occidentalis); Harlan’s ground sloth (Paramylodon harlani); and yesterday’s camel (Camelops hesternus).

The authors focussed on precisely dated specimens spanning the 15.6 to 10.0 ka time range. This would allow the disappearance times of individual species to be compared with stages in the rapid change in the Californian climate during post glacial maximum warming, those during the Younger Dryas abrupt cooling (12.9 to 11.7 ka) and the earliest Holocene warming that succeeded it. The first to go extinct were the camels and giant sloths about 13.6 ka ago. At 13.2 ka the other mammals declined very rapidly, the two remaining herbivores vanishing more quickly than the four predators. By 12.9 ka the only surviving species of the chosen eight was the coyote. So seven members of the Pleistocene mammalian megafauna became extinct before the onset of the Younger Dryas cold millennium.

Part of the team examined pollen from a core through sediments deposited in a lake 100 km south of La Brea. They found that flora, and probably climate, had not changed at the time of camel and sloth extinctions around 13.6 ka. However a 300 year period between 13.2 and 12.9 ka witnessed a collapse in deciduous tree species while conifers, grasses and drought-tolerant shrubs increased. A woodland ecosystem had been replaced by semi-arid chaparral. Another feature of the lake-bed sediments was that charcoal fragments increased explosively during that 300-year episode that ended both the woodland ecosystem and the megafauna that exploited it: undoubtedly three centuries of regular wildfires. What remained was the chaparral ecosystem based on drought-tolerant, fire-adapted plants.

Were the megafauna collapse and a change in ecology results of a climatic harbinger for the Younger Dryas cool millennium, or some other cause? Interestingly, tangible evidence for the Clovis hunting culture of North America, which has long been implicated in the faunal ‘extirpation’, does not appear until 12.9 ka, and in California neither does any implicating other human groups. Yet evidence is accumulating for much earlier entry of humans into North America. Occupation sites are very rare on land, but human presence here and there implies such earlier migration, probably along the west coast that avoided the frigid interior further north than California. The question posed by OKeefe ­et al. is, ‘Were the fires ignited by humans over a 300 year period just before the Younger Dryas’? It remains to be confirmed … First human arrivals coinciding with evidence for wildfires in Australia, New Zealand and a few other areas do suggest that it is a possibility. There needs to be a motive, such as producing lush clearings in forest to attract game, or removing cover to make hunting easier. In this case, the fires immediately preceded a global climatic downturn with terrestrial drying, so they may have had natural causes: the potentially incendiary chaparral flora had been increasing steadily beforehand and decreased rapidly after the evidence for wildfires

See also: Price, M. 2023.  Death by fire. Science, v. 381, p. 724-727; DOI: 10.1126/science.adk3291

A book on archaeology, radiocarbon dating, ancient DNA, and how modern humans evolved

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Since 2001 Tom Higham, now Professor of Scientific Archaeology at the University of Vienna, helped develop new ways of refining radiocarbon dating at Oxford University’s Research Lab for Archaeology and the History of Art. Specifically his lab learned how to remove contamination of ancient samples by recent carbon and to reduce the detection limit of their accelerator mass spectrometer for the 14C atoms that remained from when they were in living organisms. The Oxford Radiocarbon Accelerator Unit pushed sample dates to the absolute limit of the method: around 50 thousand years. Being among the very best, the ORAU had a path beaten to its doors by archaeologists from across the world keen to get the most believable dates for their samples. Equally, Higham engaged in the field work itself and in the interpretation of other data from sites, such as ancient DNA. An outcome of Higham’s energetic efforts over two decades is his book The World Before Us: How Science is Revealing a New Story of Our Human Origins (paperback edition 2022, Penguin Books,ISBN-10: ‎0241989051). One reviewer commented ‘The who, what, where, when and how of human evolution’.

The World Before Us is not only comprehensive and eminently clear for the lay-reader, but it is more exciting than any science book that I have read. For the moment, it is the latest ‘word’ on early, anatomically modern humans and on the closely related Neanderthals and Denisovans. Its core is about how these three key groups ‘rubbed along’ once they met  in the Late Pleistocene. As an amateur interested in palaeoanthropology, I have tried to keep pace with all the developments in the field since 2001 through Earth-logs, but Higham shows just how much I have missed that is important to the human story. If you have followed my many posts on human evolution and migrations with interest, read his book for a great deal more and a coherent story of how things stand.

News about when subduction began

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Tangible signs of past subduction take the form of rocks whose mineralogy shows that they have been metamorphosed under conditions of high pressure and low temperature, and then returned to the surface somehow. Ocean-crust basaltic rocks become blueschist and eclogite. The latter is denser than mantle peridotite so that oceanic lithosphere can sink and be recycled. That provides the slab-pull force, which is the major driver of plate tectonics. Unfortunately, neither blueschists nor eclogites are found in metamorphic complexes older than about 800 Ma. This absence of direct proof of subduction and thus modern style plate tectonics has resulted in lively discussion and research seeking indirect evidence for when it did begin, the progress of which since 2000 you can follow through the index for annual logs about tectonics. An interesting new approach emerged in 2017 that sought a general theory for the evolution of silicate planets, which involves the concept of ‘lid tectonics’. A planet in a stagnant-lid phase has a lithosphere that is weak as a result of high temperatures: indeed so weak and warm that subduction was impossible. Stagnant-lid tectonics does not recycle crustal material back to its source in the mantle and it simply builds up the lithosphere. Once planetary heat production wanes below a threshold level that permits a rigid lithosphere, parts of the lid can be driven into the mantle. The beginnings of this mobile-lid phase and thus plate tectonics of some kind involves surface materials in mantle convection: the may be recycled.

Cartoon of possible Hadean stagnant lid tectonics, dominated by mantle plumes. (Credit: Bédard, J.H. 2018, Fig 3B, DOI: 10.1016/j.gsf.2017.01.005)

A group of geochemists from China, Canada and Australia have sought evidence for recycled crustal rocks from silicon and oxygen isotopes in the oldest large Archaean terrane, the  4.0 Ga old Acasta Gneiss Complex in northern Canada (Zhang, Q. and 10 others 2023. No evidence of supracrustal recycling in Si-O isotopes of Earth’s oldest rocks 4 Ga ago. Science Advances, v.9, article eadf0693; DOI: 10.1126/sciadv.adf0693). Silicon has three stable isotopes 28Si, 29Si, and 30Si. As happens with a number of elements, various geochemical processes are able to selectively change the relative proportions of such isotopes: a process known as isotope fractionation. As regards silicon isotopes used to chart lithosphere recycling, the basic steps are as follows: Organisms that now remove silicon from solution in seawater to form their hard parts and accumulate in death as fine sediments like flint had not evolved in the Archaean. Because of that reasonable supposition it has been suggested that seawater during the Archaean contained far more dissolved silicon than it does now. Such a rich source of Si would have entered Archaean oceanic crust and ocean-floor sediments to precipitate silica ‘cement’. The heaviest isotope 30Si would have left solution more easily than the lighter two. Should such silicified lithosphere have descended to depths in the mantle where it could partially melt the anomalously high 30Si would be transferred to the resulting magmas.

Proportions of 30Si in zircons, quartz and whole rock for Acasta gneisses (coloured), other Archaean areas (grey) and Jack Hills zircons (open circles. Vertical lines are error bars. (Credit: simplified from Zhang et al. Fig 1)

Stable-isotope analyses by Zhang et al. revealed that zircon and quartz grains and bulk rock samples from the Acasta gneisses, with undisturbed U-Pb ages, contain 30Si in about the same proportions relative to silicon’s other stable isotopes as do samples of the mantle. So it seems that the dominant trondhjemite-tonalite-granodiorite (TTG) rocks that make up the oldest Acasta gneisses were formed by partial melting of a source that did not contain rocks from the ocean crust. Yet the Acasta Gneiss Complex also contains younger granitic rocks (3.75 to 3.50 Ga) and they are significantly more enriched in 30Si, as expected from a deep source that contained formerly oceanic rocks. A similar ‘heavy’ silicon-isotope signature is also found in samples from other Archaean terranes that are less than 3.8 Ga old. Thus a major shift from stagnant-lid tectonics to the mobile-lid form may have occurred at the end of the Hadean. But apart from the Acasta Gneiss Complex only one other, much smaller Hadean terrane has been discovered, the 4.2 Ga Nuvvuagittuq Greenstone Belt. It occupies a mere 20 km2 on the eastern shore of Hudson Bay in Canada, and appears to be a sample of Hadean oceanic crust. It does include TTG gneisses, but they are about 3.8 Ga old and contain isotopically heavy silicon. So it seems unlikely that testing this hypothesis with silicon-isotope data from other Hadean gneissic terranes will be possible for quite a while, if at all.

Geochemical evidence for the origin of eukaryotes

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Along with algae, jellyfish, oak trees, sharks and nearly every organism that can be seen with the naked eye, we are eukaryotes. The cells of every member of the Eukarya, one of the three great domains of life, all contain a nucleus – the main location of genetic material – and a variety of other small bodies known as organelles, such as the mitochondria of animals and the chloroplasts of plant cells. The vast bulk of organisms that we can’t see unaided are prokaryotes, divided into the domains of Bacteria and Archaea. Their genetic material floats around in their cells’ fluid. The DNA of eukaryotes shares some stretches with prokaryotes, but no prokaryotes contain any eukaryote genetic material. This suggests that the Eukarya arose after the Bacteria and Archaea, and also that they are a product of evolution from prokaryotes, probably by several combining in symbiotic relationships inside a shared cell membrane. Earth-logs has followed developments surrounding this major issue since 2002, as reflected in some of the posts linked to what follows. 

While prokaryotes can live in every conceivable environment at the Earth’s surface and even in a few kilometres of crust beneath, the vast majority of eukaryotes depend on free oxygen for their metabolism. Logically, the earliest of the Eukarya could only have emerged when oxygen began to appear in the oceans following the Great Oxidation Event around 2.4 billion years ago. That is more than a billion years after the first prokaryotes had left their geological signature in the form of curiously bulbous, layered carbonate structures (stromatolites), probably formed by bacterial mats. The oldest occur in the Archaean rocks of Western Australia as far back as 3.5 Ga, and disputed examples have been found in the 3.7 Ga Isua sediments of West Greenland. The oldest of them are thought to have been produced through the anoxygenic photosynthesis of purple bacteria (See: Molecular ‘fossils’ and the emergence of photosynthesis; September 2000), suggested by organic molecules found in kerogen from early Archaean sediments. Later stromatolites (<3.0 Ga) have provided similar evidence for oxygen-producing cyanobacteria.

Acritarchs are microfossils of single-celled organisms made of kerogen that have been found in sediments up to 1.8 billion years old. Features protruding from their cell walls distinguish them from prokaryote cells, which are more or less ‘smooth’: acritarchs have been considered as possible early eukaryotes. Yet the oldest undisputed eukaryote microfossils – red and green algae – are much younger (about 1.0 Ga). A means of estimating an age for the crown group from which every later eukaryote organism evolved – last eukaryotic common ancestor (LECA) – is to use an assumed rate of mutation in DNA to deduce the time when differences in genetics between living eukaryotes began to diverge: i.e. a ‘molecular clock’. This gives a time around 2 Ga ago, but the method is fraught with uncertainties, not the least being the high possibility of mutation rates changing through time. So, when the Eukarya arose is blurred within the so-called ‘boring billion’ of the early Proterozoic Eon. A way of resolving this uncertainty to some extent is to look for ‘biomarker’ chemicals in the geological record that provide a ‘signature’ for eukaryotes.

A new study has been undertaken by a group of Australian, German and French scientists to analyse sediments ranging in age from 635 to 1640 Ma from Australia, China, Asia, Africa, North and South America (Brocks, J.J and 9 others 2023. Lost world of complex life and the late rise of the eukaryotic crown. Nature, v. 618, p. 767–773; DOI: 10.1038/s41586-023-06170-w; contact for PDF). Their chosen biomarkers are sterols (steroids) that regulate eukaryote cell membranes. Some prokaryotes also synthesise steroids but all of them produce hopanepolyols (hopanoids), which eukaryotes do not. The key measures for the presence/absence of eukaryote remains in ancient sea-floor sediments is thus the relative proportions of preserved steroids and hopanoids, together with those for the breakdown products of both – steranes and hopanesthat are, crudely speaking, carbon ‘skeletons’ of the original chemicals.

Proportions of biomarkers in sediments from present to 1.64 Ga. Cholesteroids – reds; ergosteroids – blues; stigmasteroids – greens; protosteroids magentas, hopanoids – yellows; unsampled – grey. Snowball glaciations are shown in pale blue. (Credit: Simplified from Figure 3 in Brocks et al.)

Interpretation of the results by Jochen Brocks and colleagues is complicated, and what follows is a summary based partly on an accompanying Nature News & Views article(Kenig, F. 2023. The long infancy of sterol biosynthesis. Nature, v. 618, p. 678-680; DOI: 10.1038/d41586-023-01816-1). The conclusions of Brocks et al. are surprising. First, the break-down products of steroids (saturated steranes) that can be attributed to crown eukaryotes (left on the figure above) are only present in sediments going back to about 200 Ma before the first Snowball Earth event (~900 Ma). Before that only hopanes formed by hopanoid degradation are present: a suggestion that LECA only appeared around that time – the authors suggest sometime between 1 and 1.2 Ga. That is far later than the time when eukaryotes could have emerged: i.e. once there was available oxygen after the Great Oxidation Event (~2.4 to 2.2 Ga). So what was going on before this? The authors broke new ground in analysis of biomarkers by being able to detect signs of the presence of actual hopanoids and steroids of several different kinds. Steroids were present as far back as 1.6 Ga in the oldest sediments that were analysed.

Steroids of crown eukaryotes are represented by cholesteroids, ergosteroids and stigmasteroids. All three are present throughout the Phanerozoic Eon and into the time of the Ediacaran Fauna that began 630 Ma ago. In that time span they generally outweigh hopanoids, thus reflecting the dominance of eukaryotes over prokaryotes. Back to about 900 Ma, only cholesteroids are present, together with archaic forms that are not found in living Eukarya, termed protosteroids.  Before that, only protosteroids are found. Moreover, these archaic steroids are not present in sediments that follow the Snowball Earth episodes (the Cryogenian Period).

Thus, it is possible that crown group eukaryotes – and their descendants, including us – evolved from and completely replaced an earlier primitive form (acritarchs?) at around the time of the greatest climatic changes that the Earth had experienced in the previous billion years or more. Moreover, the Cryogenian and Ediacaran Periods seem to show a rapid emergence of stigmasteroid- and ergosteroid production relative to cholesteroid: perhaps a result of explosive evolution of the Eukarya at that time. The organisms that produced protosteroids were present in variable amounts throughout the Mesoproteroic. Clearly there need to be similar analyses of sediments going back to the Great Oxygenation Event and the preceding Archaean to see if the protosteroid producers arose along with increasing levels of molecular oxygen. The ‘boring billion’ (2.0 to 1.0 Ga) may well be more interesting than previously thought.

Early modern human fossils from a Laotian cave and the eastward ‘out-of-Africa’ migration

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Finding human fossils in SE Asia is rare because its tropical climate generally results in decomposition of bones. Up to now the oldest known anatomically modern human (AMH) found beyond the Middle East is from Australia and has been dated to 65 ka. Other, less convincing candidates for the earliest appearance of AMH in Asia are scattered teeth found in Chinese caves that yielded dates of up to 139 ka: their assignment to AMH and the reliability of their dating are disputed. Now a large team of scientists from the USA, Germany, Australia, South Africa, France, Denmark and Laos have unearthed convincing but fragmented AMH bones among a jumble of diverse animal fossils in sediment flooring Tam Pà Ling cave  in northern Laos (Friedline, S.E. and 30 others 2023. Early presence of Homo sapiens in Southeast Asia by 86–68 kyr at Tam Pà Ling, Northern Laos. Nature Communications, v. 14, article 3193; DOI: 10.1038/s41467-023-38715-y). Several dating techniques reveal ages of the AMH samples that range from 46 to 77 ka, and potentially as far back as 86 ka. It is conceivable that the oldest are from the population that subsequently reached Australia. Far to the west of Laos in Greece, Israel and Arabia an earlier AMH presence goes back as far as 90 to 210 ka. Moreover, palaeoclimatic studies suggest many opportunities for eastward migration since 290 ka ago that AMH emigrants may have exploited. Once beyond regions around Arabia and the Gulf, which were periodically hyperarid, the journey to the rest of Asia was probably continuously habitable throughout the last two glacial-interglacial cycles.

Entrance to Tam Pà Ling cave in northern Laos (credit: Demeter et al.; Fig S1)

Another aspect of the AMH record in southern and SE Asia is that the individuals represented seem to have been anatomically very varied (Demeter, F. et al. 2023. Early Modern Humans and Morphological Variation in Southeast Asia: Fossil Evidence from Tam Pa Ling, Laos. PLOS ONE, v. 10, article e0121193. DOI:10.1371/journal.pone.0121193). This may suggest that migration was by significantly different groups at different times. Oddly, the earliest known examples have more ‘modern’ characteristics than younger ones that appear somewhat ‘archaic’. The age of the fossils conflicts with the 60 ka age reconstructed from genetic evidence for the main diffusion across Eurasia and Australasia. One possibility is that there were several pre-60 ka migrations, descendents of these early populations having been replaced or assimilated by a later, larger numbers of AMH migrants. At 74 ka the Sumatran Toba supervolcano erupted about 2,800 km3 of ash to blanket a vast area and cause global cooling that could have more than decimated migrating AMH groups. Alternatively the 60 ka ‘genetics’ date is not correct, as suggested by the minimum date of 65 ka for the earliest Australians. Such a conflict of evidence will surely spur further excavation: as one researcher observed about Laos, ‘There are thousands of caves to explore’.

See also: Coleman, J. 2023. Laos cave fossils prompt rethink of human migration map. Nature, v.618; DOI: 10.1038/d41586-023-01903-3; Ashworth, J. 2023. Fossils reveal early modern humans in southeast Asia 77,000 years ago. Natural History Museum’s Discover, 15 June 2023.

Did Precambrian BIFs ‘fall’ into the mantle to trigger mantle plumes?

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How the Earth has been shaped has depended to a large extent on a very simple variable among rocks: their density. Contrasts in density between vast rock masses are expressed when gravity attempts to maintain a balance of forces. The abrupt difference in elevation of the solid surface at the boundaries of oceans and continents – the Earth’s hypsometry – stems from the contrasted densities of continental and oceanic crust: the one dominated by granitic rocks (~2.8 t m-3) the other by those of basaltic composition (~ 3.0 t m-3). Astronomers have estimated that Earth’s overall density is about 5.5 t m-3 – it is the densest planet in the Solar System. The underlying mantle makes up 68% of Earth’s mass, with a density that increases with depth from 3.3 to 5.4 t m-3 in a stepwise fashion, at a number of discontinuities, because mantle minerals undergo changes induced by pressure. The remaining one third of Earth’s mass resides in the iron-nickel core at densities between 9.5 to 14.5 t m-3. Such density layering is by no means completely stable. Locally increased temperatures in mantle rocks reduce their density sufficiently for masses to rise convectively to be replaced by cooler ones, albeit slowly. By far the most important form of convection affecting the lithosphere involves the resorption of oceanic lithosphere plates at destructive margins, which results in subduction. This is thought to be due to old, cold oceanic basalts undergoing metamorphism as pressure increases during subduction. They are transformed at depth to a mineral assemblage (eclogite) that is denser (3.4 to 3.5 t m-3) than the enveloping upper mantle. That density contrast is sufficient for gravity to pull slabs of oceanic lithosphere downwards. This slab-pull force is transmitted through oceanic lithosphere that remains at the surface to become the dominant driver of modern plate tectonics. As a result, extension of the surface oceanic lithosphere at constructive margins draws mantle upwards to partially melt at reduced pressure, thus adding new basaltic crust at mid-ocean rift systems to maintain a form of mantle convection. Seismic tomography shows that active subducted slabs become ductile about 660 km beneath the surface and below that no earthquakes are detected. Quite possibly, the density of the reconstituted lithospheric slab becomes less than that of the mantle below the 660 km discontinuity. So the subducted slab continues by moving sideways and buckling in response to the ‘push’ from its rigid upper parts above. But it has been suggested that some subducted slabs do finally sink to the core-mantle boundary, but that is somewhat conjectural.

Typical banded iron formation

There are sedimentary rocks whose density at the surface exceeds that of the upper mantle: banded iron formations (BIFs) that contain up to 60% iron oxides (mainly Fe2O3) and have an average density at the surface of around 3.5 t m-3. BIFs formed mainly in the late Archaean and early Proterozoic Eons  (3.2 to 1.0 Ga) and none are known from the last 400 Ma. They formed when soluble iron-2 (Fe2+) – being added to ocean water by submarine hydrothermal activity –was precipitated as Fe3+ in the form of iron oxide (Fe2O3) where oxygen was present in ocean water. With little doubt this happened only in shallow marine basins where cyanobacteria that appeared about 3.5 Ga ago had sufficient sunlight to photosynthesise. Until about 2.4 Ga the atmosphere and thus the bulk of ocean water contained very little oxygen so the oceans were pervaded by soluble iron so that BIFs were able to form wherever such biological activity was going on. Conceivably (but not proven), that BIF-forming biochemical reaction may even have operated far from land in ocean surface water, slowly to deposit Fe2O3 on the deep ocean floor. After 2.4 Ga oxygen began to build in the atmosphere after the Great Oxidation Event had begon. That time was also when the greatest production of BIFs took place. Strangely, the amount of BIF in the geological record fell during the next 600 Ma to rise again to a very high peak at 1.8 Ga. Since there must have been sufficient soluble iron and an increasing amount of available oxygen for BIFs to form throughout that ‘lean’ period the drop in BIF formation is paradoxical. After 1.0 Ga BIFs more or less disappear. By then so much oxygen was present in the atmosphere and from top to bottom in ocean water that soluble iron was mostly precipitated at its hydrothermal source on the ocean floor. Incidentally, modern ocean surface water far from land contains so little dissolved iron that little microbiological activity goes on there: iron is an essential nutrient so the surface waters of remote oceans are effectively ‘wet deserts’.

Plots of probability of LIPs and BIFs forming at the Earth’s surface during Precambrian times, based on actual occurrences (Credit: Keller, et al., modified Fig 1A)

Spurred by the fact that if a sea-floor slab dominated by BIFs was subducted it wouldn’t need eclogite formation to sink into the mantle, Duncan Keller of Rice University in Texas and other US and Canadian colleagues have published a ‘thought experiment’ using time-series data on LIPs and BIFs compiled by other geoscientists (Keller, D.S. et al. 2023. Links between large igneous province volcanism and subducted iron formations. Nature Geoscience, v. 16, article; DOI: 10.1038/s41561-023-01188-1.). Their approach involves comparing the occurrences of 54 BIFs through time with signs of activity in the mantle during the Palaeo- and Mesoproterozoic Eras, as marked by large igneous provinces (LIPs) during that time span. To do this they calculated the degree of correlation in time between BIFs and LIPs. The authors chose a minimum area for LIPs of 400 thousand km2 – giving a total of 66 well-dated examples. Because the bulk of Precambrian flood-basalt provinces, such as occurred during the Phanerozoic, have been eroded away, most of their examples are huge, well-dated dyke swarms that almost certainly fed such plateau basalts. Rather than a direct time-correlation, what emerged was a match-up that covered 74% of the LIPs with BIFs that had formed about 241 Ma earlier. They also found a less precise correlation between LIPs associated with 241 Ma older BIFs and protracted periods of stable geomagnetic field, known as ‘superchrons’. These are thought by geophysicists to be influenced by heat flow through the core-mantle boundary (CMB).

The high bulk density of BIFs at the surface would be likely to remain about 15 % greater than that of peridotite as pressure increased with depth in the mantle. Such slabs could therefore penetrate the 660 mantle discontinuity. Their subduction would probably result in their eventually ‘piling up’ in the vicinity of the CMB. The high iron content of BIFs may also have changed the way that the core loses heat, thereby triggering mantle plumes. Certainly, there is a complex zone of ultra-low seismic velocities (ULVZ) that signifies hot, ductile material extending above the CMB. Because BIFs’ high iron-content makes them thermally highly conductive compared with basalts and other sediments, they may be responsible. Clearly, Keller et al’s hypothesis is likely to be controversial and they hope that other geoscientists will test it with new or re-analysed geophysical data. But the possibility of BIFs falling to the base of the mantle spectacularly extends the influence of surface biological processes to the entire planet. And, indeed, it may have shaped the later part of its tectonic history having changed the composition of the deep mantle. The interconnectedness of the Earth system also demands that the consequences – plumes and large igneous provinces – would have fed back to the Precambrian biosphere. See also: Iron-rich rocks unlock new insights into Earth’s planetary history, Science Daily, 2 June 2023

New drill core penetrates the Mohorovičić Discontinuity (the ‘Moho’)

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In 1909 Croatian geophysicist Andrija Mohorovičić examined seismograms of a shallow earthquake that shook the area around Zagreb. To his surprise the by-then familiar time sequence of P-waves followed by the slower S-waves appeared twice on seismic records up to 800 km away. The only explanation that he could come up with was that the first arrivals had travelled directly through the crust to the detector whereas the second set must have followed a longer path: it had travelled downwards to be refracted to reach the surface when it met rocks denser than those at the surface. His analysis revealed a sharp boundary between the Earth’s crust and its mantle at a depth of about 54 km below what was then Yugoslavia. Later workers confirmed this discovery and honoured its discoverer by naming it the Mohorovičić Discontinuity. Difficulty with pronouncing his name resulted in a geological nickname: ‘the Moho’. It can be detected everywhere: at 20 to 90 km beneath the continental surface and 5 to 10 km beneath the ocean floor, thus distinguishing between continental and oceanic crust.

In the late 1950s accelerating geological and oceanographic research that would culminate in the theory of plate tectonics turned its focus on drilling down to the Moho in much the same way as a lust for space travel spawned getting to the Moon. The difference was that the proposers of what became known as the Mohole Project were members of what amounted to a geoscientific glee club (The American Miscellaneous Society), which included a member of the well-financed US National Science Foundation’s Earth Science Panel. The idea emerged shortly after the Soviet Union had launched the Sputnik satellite and rumours emerged that it was proposing deep drilling into the continental crust beneath the Kola Peninsula.  The Mohole’s initial target was the 3.9 km deep floor of the Caribbean off Guadalupe in Mexico and required advanced methods of stabilisation for a new oceanographic ship that was to host the drilling rig.

Huge (tens of metres high) pillars or ‘chimneys’ of carbonates formed by the Lost City hydrothermal vent near the mid-Atlantic ridge (Credit: ETH Zurich)

The Mohole was spudded in 1961, but the deepest of five holes reached only 200 m beneath the sea floor. It recovered Miocene sediments and a few metres of basalt. Deep water drilling was somewhat more complicated than expected and about US$ 57 million was spent fruitlessly. The project was disbanded in 1966 with considerable acrimony and schadenfreude. Nonetheless, the Mohole fiasco made technical advances and did demonstrate the feasibility of offshore drilling. The petroleum industry benefitted and so did oceanography with the globe-spanning deep-sea drilling of ocean floor sediments. The sediment cores produced the 200 million-year exquisitely detailed record of climate change and vast amounts of geochemical data from the basaltic oceanic crust. In 2005 JOIDES (the Joint Oceanographic Institutions for Deep Earth Sampling) had another crack at the Moho. That venture centred on the intersection of the Mid-Atlantic Ridge and the Atlantis Fracture Zone close to the ‘Lost City’ hydrothermal vent. The area around the vent is the site of a huge low-angled extensional fault that has partly dragged the basaltic ocean crust off the mantle beneath causing it to bulge. This provided an excellent opportunity to drill through the Moho. All went well, but 54 days of drilling yielded 1.4 km of basalt but nothing resembling mantle rock. So, again, the Moho had thwarted Science (and research economics). But finally it is beginning to reveal it secrets (see: Voosen, P. 2023. Ocean drillers exhume a bounty of mantle rocks. Science, v. 380 (News) p. 876-877; DOI: 10.1126/science.adi9899

The area around the ‘Lost City’ vent was originally chosen for drilling to examine the chemical processes going on there. Hydrogen emitted by serpentinisation of mantle rocks can combine with carbon monoxide in hydrothermal fluids to create a wide variety of organic compounds, which could be the initial building blocks for the origin of life. As part of the International Ocean Drilling Programme JOIDES decided to launch IODP Expedition 399 to re-examine the area around ‘Lost City’ in more detail. The expedition first tried to continue drilling the 2005 hole, but failed yet again. Finally a new drill site aimed at penetrating the extensional detachment. Within a few days the drill bit punched into mantle rocks and over a 6-week period the expedition had recovered a kilometre of core. The technical accounts for each week of drilling give a flavour of what it must be like to be a part of such a ship-borne expedition as well as describing what emerged in the drill core. It seems like a bit of a jumble, dominated by the mineral olivine– the principal characteristic of the ultramafic mantle – almost pure in the rock dunite and mixed with pyroxenes in various kinds of peridotite. There are also coarse-grained rocks that contain plagioclase feldspar, which cut through the ultramafic materials – gabbros, troctolites and norites.  They are relics of intrusive basaltic magmas that did not make it to the seabed. The samples are variably altered by interaction with watery hydrothermal fluids, with lots of serpentine, talc and even asbestos: the drilling presented a health hazard for a few days. The rocks have been metamorphosed under pressure-temperature conditions of greenschist to amphibolite facies and subject to ductile deformation, probably because of the effect of extensional deformation. Whatever, there is plenty of material to be analysed, including for signs of microbial activity. So, the dreams of a 1950s academic drinking fraternity (they were all men!) have finally been realised. But since those pre-plate-tectonic times many geologists have seen and collected much the same, even putting their index fingers on the Moho itself in the time-honoured fashion. Intricate 3-D geology in ophiolite complexes such as that in Oman, provide such opportunities at the much lower cost of air travel, Land Cruiser hire and camping. Indeed what we know of the structure of the oceanic lithosphere – pillow lavas, sheeted dyke complexes, gabbro cumulates and serpentinised ultramafic mantle – has come from such bodies thrust onto continental crust at ancient plate margins. So, why the celebration in this case? They are the first samples of mantle from young oceanic lithosphere; the rocks of ophiolites may not have formed at mid-ocean ridges. These should give clues to the long-term magmatism that has created the vast abyssal basins that the mantle eventually reabsorbs by subduction. Then, of course, there is the link to biogenic processes at constructive margins that underpinned the return to the active hydrothermal venting at ‘Lost City’.

Flash: Huge rockslide imminent in Swiss village of Brienz

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The rockslide above Brienz in eastern Switzerland marked by a white surface bare of vegetation. Credit CHRISTOPH NÄNNI, TIEFBAUAMT GR, SWITZERLAND via the BBC

On 9 May 2023 the authorities of the Albula/Alvra municipality in the Swiss canton of Graubünden informed people living in the small village of Brienz that they must evacuate the area by 18 May as the threat of rock falls from the mountain beneath which they live had triggered a red alert. By 13 May all 130 dwellings had been abandoned.

The danger is posed by an estimated 5 million tons of rock associated with a developing landslide that is now estimated to be moving at around 32 m per year. The village itself had long been creeping down slope at a few centimetres each year, but recently its church spire had begun to tilt and buildings became riven by cracks. Seemingly, engineering attempts to mitigate the hazards have been unsuccessful, and large boulders have already tumbled into the vicinity of Brienz.

Being situated beneath a crumbling scree slope devoid of vegetation that had been developing since the last glaciation, the geological risk to the village comes as no surprise to its population and local authority. The local geology has a thick limestone resting on the thinly bedded Flysch – a metamorphosed sequence of fine-grained turbidites – from which groundwater escapes very slowly, thereby becoming lubricated. A curved (listric) failure zone has developed beneath the exposed mountainside, hence the danger. Acceleration on the listric surface began about 20 years ago.

At least the people of Brienz have been moved to safety, unlike 144 school children and adults in the mining village of Aberfan in South Wales. On 21 October 1966 they were crushed to death by coal-mining waste that suddenly flowed from waste tips on the steep valley side above the village. In that case no warning was given by the National Coal Board authorities who allowed  the tipping witout a thought for its geological consequences.

See also: Petley, D. 2023. The very large incipient rockslide at Brienz in Switzerland. The Landslide Blog (10 May 2023)

Origin of the genus Homo: a Paranthropus link?

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Reconstruction of a Paranthropus head (Credit: Jerry Humphrey, Pinterest)

Paranthropoids had large, broad teeth and pronounced cheekbones plus a bone crest on the top of their skulls that were the attachments for powerful jaw muscles, much as in modern gorillas. Unlike gorillas they were definitely bipedal and were more similar to australopithecines. They have been called ‘robust’ australopithecines but they were not significantly taller or heavier. The first to be unearthed at Olduvai, Tanzania in 1959 (Paranthropus boisei) was dubbed ‘Nutcracker Man’ by its finder, and many have implied that paranthropoids’ teeth and powerful jaws were signs of a vegetarian diet that needed a lot of chewing. Yet their teeth do not show the microscopic pitting associated with living primates that eat hard plant parts and nuts, or the heavy wear that results from eating grasses. They probably ate soft plants, such as semi-aquatic succulents or tubers, but meat-eating that causes little dental wear cannot be ruled out. Some specimens are associated with long bones of other animals whose ends are worn, suggesting that they may have used them as tools for digging. Plant remains found at paranthropoid sites suggests that they inhabited woodland, together with coexisting australopithecines. They were around in the form of three successive species from 2.9 to 1.2 Ma, outlasting australopithecines. The later paranthropoids coexisted with Homo habilis and H. erectus: they were clearly just as successfully adapted to their surroundings as were early humans.

In early 2023 evidence was published that associated Oldowan stone tools with remains of Paranthropus, together with deliberately defleshed and cut bones (see also): though association is not proof of a direct link. Interestingly, the hand of a P. robustus found in the Swartkrans cave system in South Africa is consistent with a human-like precision grip, i.e. it had an opposable thumb. Swarkrans also yielded the earliest evidence for the deliberate use of fire about 1.5 Ma ago, associated with remains of both P. robustus and H. erectus. All this suggests that a case could be made for paranthropoids’ being human ancestors – supporting evidence has just been published (Braga, J. et al. 2023. Hominin fossils from Kromdraai and Drimolen inform Paranthropus robustus craniofacial ontogeny. Science Advances, v. 9, article eade7165; DOI: 10.1126/sciadv.ade7165).

Fossil-bearing breccias beneath the floor of the Kromdraai cave in the Cradle of Humankind World Heritage Site 45 km NW of Johannesburg, South Africa yielded the first near-complete P. robustus skull in 1938, another being found in cave breccias at the nearby Drimolen quarry. These deposits also contained remains of four infants assigned to the species, whose teeth and cranial parts were at different stages of juvenile development (ontogeny). José Braga of the University of Toulouse, France and co-workers from South Africa and the USA compared this growth sequence with those teased out from immature specimens of Australopithecus africanus and early Homo.Their tentative conclusion is that Paranthropus robustus is more closely related to early humans than to australopithecines of the same stratigraphic age.

Skull of a probable adult female P. robustus (left) with that of H. habilis (centre) and A. africanus (right). Credits: all from Wikipedia pages

So, it now seems possible that paranthropoids are not ‘robust’ australopithecines in an acceptable, taxonomic sense. Their closer resemblance in early development to early humans, together with their association with early stone tools used for defleshing prey animals, together with evidence for possible their use of fire, further strengthens their candidacy for an ancestral link to humans. The best preserved skulls of Homo habilis and a female P. robustus (males of that species show the distinctive saggital crest) do show close similarities, that of a roughly contemporary A. africanus having distinctly wider cheeks than both. All three species were in life probably of much the same weight and stature (30 to 40 kg and 110 to 130 cm) but H. habilis had a significantly larger brain volume (500 to 900 cm3) than the other two (each ~450 cm3). However, this isn’t proof that the genus Homo evolved from a paranthropoid ancestor. That would require genetic evidence, unlikely to be extracted from specimens because DNA seems to degrade more quickly under the conditions of the tropics than at high latitudes. Debate on ultimate human origins will probably be endless. Perhaps it would make more sense simply to accept that early humans weren’t the only ‘smart kids on the palaeoanthropological block’, one of which left no issue after 1.2 Ma ago.

See also: Handwerk, B. 2023. Who made the first stone tool kits? Smithsonian Magazine, 8 February 2023, article 180981606