Category: Palaeobiology

Asteroid Bennu: a ‘lucky dip’ for NASA and planetary science

Published on by zooks777Leave a comment

I must have been about ten years old when I last saw a ‘lucky dip’ or ‘bran tub’ at a Christmas fair.  You paid two shillings (now £0.1) to rootle around in the bran for 30 seconds and grab the first sizeable wrapped object that came to hand:. In my case that would be a cheap toy or trinket, but you never knew your luck as regards the top prize. There is a small asteroid called 101955 Bennu, about half a kilometre across, whose orbit around the Sun crosses that of the Earth. So it’s a bit scary, being predicted to pass within 750,000 km of Earth in September 2060 and has a 1 in 1,880 chance of colliding with us between 2178 and 2290 CE. Because Earth-crossing asteroids are a cheaper target than those in the Asteroid Belt, in 2016 NASA launched a mission named OSIRIS-REx to intercept Bennu, image it in great detail, snaffle a sample and ultimately return the sample to Earth for analysis. This wasn’t a shot in the dark, as a lot of effort and funds were expended to target and then visit Bennu. But unlike me at the fair ground, NASA will be very happy with the outcome.

The asteroid Bennu, showing its oblate spheroidal shape, due to rotation, and its rubbly structure. Source: NASA/Goddard/University of Arizona via Wikimedia Commons

Bennu is a product of what might be regarded as ‘space sedimentation’, indeed a kind of conglomerate, being made up of boulders up to 58 m across set in gravelly and finer debris or ‘regolith’. High-resolution images revealed veins of carbonate minerals in the boulders. They suggest hydrothermal activity in a much larger parent body – one of many proto-planets accreted from interstellar gas and dust as the Solar System first began to form over 4.5 billion years ago. Its collision with another sizeable body knocked off debris to send a particulate cloud towards the Sun, subsequently to clump together as Bennu by mutual gravitational attraction. The carbonate veins can only have formed by circulation of water inside Benno’s  parent.

The ‘REx’ in the mission’s name is an acronym for ‘Regolith Explorer’. Sampling was accomplished on 20 October 2020 by a soft landing that drove a sample into a capsule, and then OSIRIS-REx ‘pogo-sticked’ off with the booty. The capsule was dropped off by parachute after the mission’s return on 24 September 2023, in the manner of an Amazon delivery by drone to a happy customer. So, you can understand my ‘lucky dip’ metaphor. And NASA certainly was ‘lucky’ as the contents turned out to be astonishing, as related two years later by the analytical team in the US, led by NASA’s Angel Mojarro (Mojarro, A. et al. 2025.Prebiotic organic compounds in samples of asteroid Bennu indicate heterogeneous aqueous alteration. Proceedings of the National Academy of Science, v. 122, article e2512461122; DOI: 10.1073/pnas.2512461122).

The rock itself is made from bits of carbonaceous chondrite, the most primitive matter orbiting the Sun. It contains fifteen amino acids, including all five nucleobases that make up RNA and DNA – adenine (A), guanine (G), cytosine (C), thymine (T) and uracil (U) – as in AUGC and AGCT. Benno’s complement of amino acids included 14 of the 20 used by life on Earth to synthesise proteins. The fifteenth, tryptophan, has never confidently been seen in extraterrestrial material before. Alkylated polycyclic aromatic hydrocarbons, also found in Bennu, are seen in abundance in interstellar gas clouds and comets by detecting their characteristic fluorescence when illuminated by mid-infrared radiation from hot stars using data from the Spitzer and James Webb Space Telescopes. These prebiotic organic compounds have been suggested to have played a role in the origin of life, but exposure to many produced by human activities are implicated in many cancers and cardiovascular issues.  A second paper by Japanese biochemists and colleagues from the US was also published in early December 2025 (Furukawa, Y. and 13 others 2025. Bio-essential sugars in samples from asteroid Bennu. Nature Geoscience, v. 12, online article; DOI: 10.1038/s41561-025-01838). The authors identified several kinds of sugars in a sample from Bennu, including ribose – essential for building RNA – and glucose. Bennu also contains formaldehyde – a precursor of sugars – perhaps originally in the same brines in which the amino acids formed.

Yet another publication coinciding with the aforementioned two focuses on products of the oldest event in the formation of Bennu: its content of pre-solar grains (Nguyen, A.N. et al. 2025. Abundant supernova dust and heterogeneous aqueous alteration revealed by stardust in two lithologies of asteroid Bennu. Nature Astronomy, v. 9, p. 1812-1820; DOI: 10.1038/s41550-025-02688-3).  In 1969 a 2 tonne carbonaceous chondrite fell near Allende in Mexico. The largest of this class ever found, it contained tiny, pale inclusions that eight years of research revealed to represent materials completely alien to the Solar System. They are characterised by proportions of isotopes of many elements that are very different from those in terrestrial materials. The anomalies could only have formed by decay of extremely short-lived isotopes that highly energetic cosmic rays produce in a manner analogous to neutron bombardment: they are products of nuclear transmutation. It is possible to estimate when the parent isotopes produced the anomalous ‘daughter’ products. One study found ages ranging from 4.6 to 7.5 Ga: up to three billion years before the Solar System began to form. It is likely that the grains are literally ‘star dust’ formed during supernovae in nearby parts of the Milky Way galaxy. Bennu samples contain six-times more presolar grains than any other chondritic meteorites. Nguyen et al. geochemically teased out grains with different nucleosynthetic origins. These ancient relics point to Bennu’s formation in a region of the presolar cloud that preceded the protoplanetary disk and was a mix of products from several stellar settings.

The results from asteroid Bennu support the key idea that that amino acid building blocks for all proteins and the nucleobases of the genetic code, together with other biologically vital compounds arose together in a primitive asteroid.  Its evolution provided the physical conditions, especially the trapping of water, for the interaction of simpler components manufactured in interstellar clouds. Such ‘fertile’ planetesimals and debris from them almost certainly accreted to form planets and endowed them with the potential for life. What astonishes me is that Bennu contains the five nucleobases used in terrestrial genetics and 70% of the amino acids from which all known proteins are assembled by terrestrial life. But, as I try to explain in my book Stepping Stones: The Making of Our Home World, life as we know it arose, survived and evolved through a hugely complex concatenation of physical and chemical events lasting more than 4.5 billion years. The major events and the sequences in which they manifested themselves may indeed have been unique. Earth is a product of luck and so are we!

See also: Tabor, A. et al. 2025. Sugars, ‘Gum,’ Stardust Found in NASA’s Asteroid Bennu Samples. NASA article 2 December 2025. Glavin, D.P. and 61 others 2025. Abundant ammonia and nitrogen-rich soluble organic matter in samples from asteroid (101955) Bennu. Nature Astronomy, v. 9, p. 199-210; DOI: 10.1038/s41550-024-02472-9

The ‘boring billion’ years of the Mesoproterozoic: plate tectonics and the eukaryotes

Published on by zooks777Leave a comment

The emergence of the eukaryotes – of which we are a late-entry member – has been debated for quite a while. In 2023 Earth-logs reportedthat a study of ‘biomarker’ organic chemicals in Proterozoic sediments suggests that eukaryotes cannot be traced back further than about 900 Ma ago using such an approach. At about the same time another biomarker study showed signs of a eukaryote presence at around 1050 Ma. Both outcomes seriously contradicted a ‘molecular-clock’ approach based on the DNA of modern members of the Eukarya and estimates of the rate of genetic mutation. That method sought to deduce the time in the past when the last eukaryotic common ancestor (LECA) appeared. It pointed to about 2 Ga ago, i.e. a few hundred million years after the Great Oxygenation Event got underway. Since eukaryote metabolism depends on oxygen, the molecular-clock result seems reasonable. The biomarker evidence does not. But were the Palaeo- and Mesoproterozoic Eras truly ‘boring’? A recent paper by Dietmar Müller and colleagues from the Universities of Sydney and Adelaide, Australia definitely shows that geologically they were far from that (Müller, R.D. et al. 2025. Mid-Proterozoic expansion of passive margins and reduction in volcanic outgassing supported marine oxygenation and eukaryogenesis. Earth and Planetary Science Letters, v. 672; DOI: 10.1016/j.epsl.2025.119683).

Carbon influx (million tons per year) into tectonic plates and into the ocean-atmosphere system from 1800 Ma to present. The colour bands represent: total carbon influx into the atmosphere (mauve); sequestered in tectonic plates (green); net atmospheric influx i.e. total minus carbon sequestered into plates (orange). The widths of the bands show the uncertainties of the calculated masses shown as darker coloured lines.

From 1800 to 800 Ma two supercontinents– Nuna-Columbia and Rodinia – aggregated nearly all existing continental masses, and then broke apart. Continents had collided and then split asunder to drift. So plate tectonics was very active and encompassed the entire planet, as Müller et al’s palaeogeographic animation reveals dramatically. Tectonics behaved in much the same fashion through the succeeding Neoproterozoic and Phanerozoic to build-up then fragment the more familiar supercontinent of Pangaea. Such dynamic events emit magma to form new oceanic lithosphere at oceanic rift systems and arc volcanoes above subduction zones, interspersed with plume-related large igneous provinces and they wax and wane. Inevitably, such partial melting delivered carbon dioxide to the atmosphere. Reaction on land and in the rubbly flanks of spreading ridges between new lithosphere and dissolved CO2 drew down and sequestered some of that gas in the form of solid carbonate minerals. Continental collisions raised the land surface and the pace of weathering, which also acted as a carbon sink. But they also involved metamorphism that released carbon dioxide from limestones involved in the crustal transformation. This protracted and changing tectonic evolution is completely bound up through the rock cycle with geochemical change in the carbon cycle.

From the latest knowledge of the tectonic and other factors behind the accretion and break-up of Nuna and Rodinia, Müller et al. were able to model the changes in the carbon cycle during the ‘boring billion’ and their effects on climate and the chemistry of the oceans. For instance, about 1.46 Ga ago, the total length of continental margins doubled while Nuna broke apart. That would have hugely increased the area of shallow shelf seas where living processes would have been concentrated, including the photosynthetic emission of oxygen. In an evolutionary sense this increased, diversified and separated the ecological niches in which evolution could prosper. It also increased the sequestration of greenhouse gas through reactions on the flanks of a multiplicity of oceanic rift systems, thereby cooling the planet. Translating this into a geochemical model of the changing carbon cycle (see figure) suggests that the rate of carbon addition to the atmosphere (outgassing) halved during the Mesoproterozoic. The carbon cycle and probable global cooling bound up with Nuna’s breakup ended with the start of Rodinia’s aggregation about 1000 Ma ago and the time that biomarkers first indicate the presence of eukaryotes.

Simplified structures of (a) a prokaryote cell; (b) a simple eukaryote animal cell. Plants also contain organelles called chloroplasts

So, did tectonics play a major role in the rise of the Eukarya? Well, of course it did, as much as it was subsequently the changing background to the appearance of the Ediacaran animals and the evolutionary carnival of the Phanerozoic. But did it affect the billion-year delay of ‘eukaryogenesis’ during prolonged availability of the oxygen that such a biological revolution demanded? Possibly not. Lyn Margulis’s hypothesis of the origin of the basic eukaryote cell by a process of ‘endosymbiosis’ is still the best candidate 50 years on. She suggested that such cells were built from various forms of bacteria and archaea successively being engulfed within a cell wall to function together through symbiosis. Compared with prokaryote cells those of the eukaryotes are enormously complex. At each stage the symbionts had to be or become compatible to survive. It is highly unlikely that all components entered the relationship together. Each possible kind of cell assembly was also subject to evolutionary pressures. This clearly was a slow evolutionary process, probably only surviving from stage to stage because of the global presence of a little oxygen. But the eukaryote cell may also have been forced to restart again and again until a stable form emerged.

See also: New Clues Show Earth’s “Boring Billion” Sparked the Rise of Life. SciTechDaily, 3  November 2025

AI unravels chemical signs of the earliest life on Earth

Published on by zooks777Leave a comment

Evidence for the earliest life on Earth has largely relied on finding signs of structures that may have been created during the Archaean Eon by micro-organisms. Actual fossils don’t turn up until the Proterozoic. The most distinctive and diverse of these are members of the Ediacaran fauna dated at around 635 Ma . The oldest widely accepted multi-celled eukaryote fossil was found in 2.1 billion-year old sediments from Gabon (see: The earliest multicelled life; July 2010). There have been a few claims for biogenic material, such as microscopic tubular structures in 3.5 billion-year (Ga) old pillow lavas and 3.2 Ga cherts from South Africa (see: Early biomarkers in South African pillow lavas; April 2004 and Believable Archaean fossils; March 2010) which some researchers dispute. Then there are Archaean stromatolites, which may be evidence for bacterial mats. The oldest of them have been claimed to occur in the famous, 3.77 Ga Isua metasediments of West Greenland. But such early fossils are chance finds, so geochemists have entered the arena with attempts to find irrefutable chemical signatures for life in ancient rocks.

One approach is isotope geochemistry. Carbon isotope data have been widely used, because life processes, such as photosynthesis, result in a deficiency of 13C relative to 12C. This was tried on graphite crystals trapped in sedimentary phosphate minerals from Isua. The results were at first acclaimed as a sign of life at around 3.8 Ga, but then refuted. In 2015 a similar approach was applied to graphite trapped in a 4.1 Ga detrital zircon, seemingly pushing back evidence for life into the Hadean. But zircon is a mineral produced by crystallisation of magma, so the fractionation of carbon isotopes in trapped graphite seem unlikely to shed light on the earliest life. The main drawback to using carbon isotopes is because metamorphism, Fischer-Tropsch mechanisms in hydrothermal environments, and volcanic processes may be responsible for enrichment of lighter carbon isotopes relative to 13C. The relative abundance of the different isotopes of iron in Archaean sediment may give clues to the transient availability of oxygen generated by bacterial photosynthesis that would oxidise soluble Fe2+ to insoluble Fe3+. Promising results were obtained in 2013 from 3.8 Ga banded ironstones at Isua. But doubt was again raised, so the only generally accepted evidence is that of the microfossils found in hydrothermal cherts in Palaeoarchaean pillow lavas from South Africa and Western Australia and the earliest stromatolites, all around 3.4 to 3.5 Ga old. However, recent research may have opened up a more convincing route to tracking down ancient life forms –actual organic molecules that make up or are produced by organisms.

Michael Wong and co-workers at the Carnegie Institution for Science in Washington, DC, USA together with other colleagues from the US, Austria, Canada, China, Belgium, Norway, Australia, the UK and France used artificial intelligence to wade through the results of geochemical analysis of over 400 ancient and modern carbon-bearing samples. (Wong, M.I. and 28 others 2025. Organic geochemical evidence for life in Archean rocks identified by pyrolysis–GC–MS and supervised machine learning. Proceedings of the National Academy of Sciences, v. 122, article e2514534122: DOI: 10.1073/pnas.2514534122). Their objective was to track the presence of organically derived molecules as far back as possible. Their approach bears a passing resemblance to that used to build genomes of ancient fossils from broken bits of DNA that reside in them. Like DNA, bio-molecules degrade over time, but leave fragments in rocks that can be detected using pyrolysis gas chromatography and mass spectrometry. In itself PGC-MS is not especially new, but using artificial intelligence (machine learning) on a massive date set certainly is: perhaps the first major trial of AI in geology.

Percentages of samples designated as biogenic by Wong et al’s AI analysis. Credit: Wong et al, Fig 4

Their samples were not just ancient rocks going back into the Archaean as far back as 3.5 Ga, but included modern biological material, meteorites presumed to have been devoid of life since their origin in pre-solar system times and synthetic samples. Wong et al divided 272 samples with known biological affinities into 9 groups to train the AI algorithm. The analytical method breaks down organic and inorganic carbonaceous materials into fragments of molecules: the opposite of DNA sequencing. When subjected to PGC-MS each type of living organism, from bacteria to animals produces a distinct pattern of molecular fragments. The AI analysis is based on a sophisticated statistical algorithm being trained to recognise ‘debris’ from organic and inorganic carbonaceous compounds according to each sample’s geochemical ‘fingerprint’. Part of the ‘training’ was based on sediments that contain irrefutable fossil samples from as far back in time as the Mesoproterozoic (1000 Ma). Another part was based on definitely inorganic materials, such as carbonaceous meteorites. AI proved able to distinguish biological from inorganic material with a probability up to 0.9 (90%). These results suggested that older, more biologically uncertain material could be assessed.

The AI was able to distinguish general biogenic affinities from inorganic ones in samples with decreasing success going back in time: as high as 0.93 in the Phanerozoic to 0.47 in the Archaean. The oldest samples that reached the probability threshold for this distinction (0.6) were 3.3 Ga cherts from the Barberton Greenstone Belt in South Africa. Another distinction between photosynthetic and and non-photosynthetic affinities among the samples that ‘passed’ as probably biotic reached the 0.6 probability threshold at 2.5 Ga for a sample from South Africa. Non-photosynthetic, but still probably biotic samples extend as far back as 3.5 Ga in South African and Western Australian Greenstone Belts.

Although Wong et al’s preliminary exploration with their novel approach doesn’t take us beyond the current 3.4 to 3.5 Ga age for the earliest tangible suggestions of life. However, they note ‘…our sample inventory is notably lacking in ancient abiogenic samples’. This is a good indication of the promise for further progress that the approach offers. Previous research has sought intact biogenic molecules, with not a great deal of luck, over several decades. Their final conclusion is ‘…information-rich attributes of ancient organic matter, even though highly degraded and with few if any surviving biomolecules, have much to reveal about the nature and evolution of life.’ They have opened a very important avenue in palaeobiological research , as their methodology seems capable of fine tuning to all manner of pro- and eukaryote biochemical distinctions. It could even be used with extraterrestrial material, should we ever get any …

See also: Walsh, E. 2025. Researchers report earliest molecular evidence of photosynthetic life. Chemical & Engineering News, 18 November 2025.

A ‘worm’ revolution and ecological transition before the Cambrian explosion

Published on by zooks7772 Comments
Bioturbated ‘pipe rock’ of the basal Cambrian sandstones of NW Scotland. Credit: British Geological Survey photograph P531881

About 530 Ma ago most of the basic body plans of today’s living organisms can be detected as fossils, i.e. preserved hard parts. Yet studies of trace fossils (ichnofossils) – marks left in sediments by active soft bodied creatures suggest that many modern phyla arose before the start of the Cambrian (~539 Ma), as early as 545 Ma. So the term ‘Cambrian explosion’ seems to be a bit of a misnomer on two counts: it lasted around 15 Ma and began before the Cambrian. Preceding it was the Ediacaran Period that began around 100 Ma earlier in the Neoproterozoic Era. Traces of its eponymous fauna of large soft-bodied organisms are found on all continents, but apparently none of them made it into the Phanerozoic fossil record. Another characteristic of the Ediacaran is that its sedimentary rocks – and those of earlier times – show no signs of burrowing: they are not bioturbated. That may be why the Ediacaran pancake-, bun-, bag- and pen-like lifeforms are so remarkably well preserved. But a lack of burrowing did not extend to the beginning of Cambrian times. The most likely reason why it was absent during the early Ediacaran Period is that sea-floor sediments then were devoid of oxygen so eukaryote animals could not live in them. But the presence of these large organisms showed that seawater must have been oxygenated. Now clear signs of burrowing have emerged from study of Ediacaran rocks exposed in the Yangtze Gorge of Hubei,southern China ( Zhe Chen & Yarong Liu 2025. Advent of three-dimensional sediment exploration reveals Ediacaran-Cambrian ecosystem transition. Science Advances, v. 11, article eadx9449; DOI: 10.1126/sciadv.adx9449).

Tadpole-like trace fossils from the Ediacaran Dengying Formation in the Yangtze Gorge: 5 cm scale bars. The ‘heads’ show tiny depressions suggesting that there maker probed into the sediments as well as foraging horizontally. Credit: Zhe Chen & Yarong Liu; Figs 3B and 3D

Zhe Chen and Yarong Liu of the Nanjing Institute of Geology and Palaeontology and Chinese Academy of Sciences in China examined carbonates of the upper Ediacaran Dengying Formation. This overlies the Doushantuo Formation (550 to 635 Ma), known for tiny fossils of possibly the oldest deuterostome Saccorhytus coronaries; a potential candidate for the ancestor of modern bilaterian phyla. In the Yangtze Gorge locality sediments at this level show only traces of browsing of bacterial mats on the sediment surface; i.e. 2-D feeders. The basal Dengying sediments host clear signs that organisms could then penetrate into the sediments. These 3-D feeders , would have had access to buried organic remains, hitherto unexploited by living organisms. Such animal-sediment interactions would have disturbed and diminished the living microbial mats that held the sediment surface in place, and thus began to dismantle the substrate for the typical Edicaran fauna. Similar 3-D feeders occur throughout the 11 Ma represented by the Dengying Formation to the start of the Cambrian. This beginning of bioturbation heralded a period during which the Ediacaran fauna steadily waned. It also released nutrients into deep water, and opened up new ecological niches for more advanced animals on the seabed.  Dissolved oxygen could only slowly enter the sediments since atmospheric and oceanic O2 levels were low. But by the earliest Cambrian it had risen to about 5 to 10% by volume to support many other kinds of burrowing animals that could penetrate more deeply, as witnessed by the abundant sandstones that occur at the base of the Cambrian in Britain.

A possible Chinese ancestor for Denisovans, Neanderthals and modern humans

Published on by zooks777Leave a comment

Assigning human fossils older than around 250 ka to different groups of the genus Homo depends entirely on their physical features. That is because ancient DNA has yet to be found and analysed from specimens older than that. The phylogeny of older human remains is also generally restricted to the bones that make up their heads; 21 that are fixed together in the skull and face, plus the moveable lower jaw or mandible. Far more teeth than crania have been discovered and considerable weight is given to differences in human dentition. Teeth are not bones, but they are much more durable, having no fibrous structure and vary a great deal. The main problem for palaeoanthropologists is that living humans are very diverse in their cranial characteristics, and so it is reasonable to infer that all ancient human groups were characterised by such polymorphism, and may have overlapped in their physical appearance. A measure of this is that assigning fossils to anatomically modern humans, i.e. Homo sapiens, relies to a large extent on whether or not their lower mandible juts out to define a chin. All earlier hominins and indeed all other living apes might be regarded as ‘chinless wonders’! This pejorative term suggests dim-wittedness to most people, and anthropologists have had to inure themselves to such crude cultural conjecture.

The extraction, sequencing and comparison of ancient DNA from human fossils since 2010 has revealed that three distinct human species coexisted and interbred in Eurasia. Several well preserved examples of ancient Neanderthals and anatomically modern humans (AMH) have had their DNA sequenced, but a Denisovan genome has only emerged from a few bone fragments from the Denisova Cave in western Siberia. Whereas Neanderthals have well-known robust physical characters, until 2025 palaeoanthropologists had little idea of what Denisovans may have looked like. Then proteins and, most importantly, mitochondrial DNA (mtDNA) were extracted from a very robust skull found around 1931 in Harbin, China, dated at 146 ka. Analysis of the mtDNA and proteins, from dental plaque and bone respectively, reveal that the Harbin skull is likely to be that of a Denisovan. Previously it had been referred to as Homo longi, or ‘Dragon Man’, along with several other very robust Chinese skulls of a variety of ages.

The distorted Yunxian cranium (right) and its reconstruction (middle) [Credit: Guanghui Zhao] compared with the Harbin Denisovan cranium (left) [Hebei Geo University]

The sparse genetic data have been used to suggest the times when the three different coexisting groups diverged. DNA in Y chromosomes from Denisovans and Neanderthals suggest that the two lineages split from a common ancestor around 700 ka ago, whereas Neanderthals and modern humans diverged genetically at about 370 ka. Yet the presence of sections of DNA from both archaic groups in living humans and the discovery that a female Neanderthal from Denisova cave had a Neanderthal mother and a Denisovan father reveals that all three were interfertile when they met and interacted. Such admixture events clearly have implications for earlier humans. There are signs of at least 6 coexisting groups as far back as the Middle Pleistocene (781 to 126 ka), referred to by some as the ‘muddle in the middle’ because such an association has increasingly mystified palaeoanthropologists. A million-year-old, cranium found near Yunxian in Hubei Province, China, distorted by the pressure of sediments in which it was buried, has been digitally reconstructed.

This reconstruction encouraged a team of Chinese scientists, together with Chris Stringer of the UK Museum of Natural History, to undertake a complex statistical study of the Yunxian cranium. Their method compares it with anatomical data for all members of the genus Homo from Eurasia and Africa, i.e. as far back as the 2.4 Ma old H. habilis (Xiabo Feng and 12 others 2025. The phylogenetic position of the Yunxian cranium elucidates the origin of Homo longi and the Denisovans. Science, v. 389, p. 1320-1324; DOI: 10.1126/science.ado9202). The study has produced a plausible framework that suggests that the five large-brained humans known from 800 ka ago – Homo erectus (Asian), H. heidelbergensis, H. longi (Denisovans), H. sapiens, and H. neanderthalensis – began diverging from one another more than a million years ago. The authors regard the Yuxian specimen as an early participant in that evolutionary process. The fact that at least some remained interfertile long after the divergence began suggests that it was part of the earlier human evolutionary process. It is also possible that the repeated morphological divergence may stem from genetic drift. That process involves small populations with limited genetic diversity that are separated from other groups, perhaps by near-extinction in a population bottleneck or as a result of the founder effect when a small group splits from a larger population during migration. The global population of early humans was inevitably very low, and migrations would dilute and fragment each group’s gene pool.

The earliest evidence for migration of humans out of Africa emerged from the discovery of five 1.8 Ma old crania of H. erectus at Dmanisi to the east of the Black Sea in Georgia. similar archaic crania have been found in eastern Eurasia, especially China, at various localities with Early- to Middle Pleistocene dates. The earliest European large-brained humans – 1.2 to 0.8 Ma old H. antecessor from northern Spain – must have migrated a huge distance from either Africa or from eastern Eurasia and may have been a product of the divergence-convergence evolutionary framework suggested by Xiabo Feng and colleagues. Such a framework implies that even earlier members of what became the longi, heidelbergensis, neanderthalensis, and sapiens lineages may await either recognition or discovery elsewhere. But the whole issue raises questions about the widely held view that Homo sapiens first appeared 300 ka ago in North Africa and then populated the rest of that continent. Was that specimen a migrant from Eurasia or from elsewhere in Africa? The model suggested by Xiabo Feng and colleagues is already attracting controversy, but that is nothing new among palaeoanthropologists. Yet it is based on cutting edge phylogeny derived from physical characteristics of hominin fossils: the traditional approach by all palaeobiologists. Such disputes cannot be resolved without ancient DNA or protein assemblages. But neither is a completely hopeless task, for Siberian mammoth teeth have yielded DNA as old as 1.2 Ma and the record is held by genetic material recovered from sediments in Greenland that are up to 2.1 Ma old. The chances of pushing ancient human DNA studies back to the ‘muddle’ in the Middle Pleistocene depend on finding human fossils at high latitudes in sediments of past glacial maxima or very old permafrost, for DNA degrades more rapidly as environmental temperature rises.

See also: Natural History Museum press release. Analysis of reconstructed ancient skull pushes back our origins by 400,000 years to more than one million years ago. 25 September 2025; Bower, B. 2025. An ancient Chinese skull might change how we see our human roots. ScienceNews, 25 September 2025; Ghosh, P. 2025. Million-year-old skull rewrites human evolution, scientists claim. The Guardian, 25 September 2025

The end-Triassic mass extinction and ocean acidification

Published on by zooks777Leave a comment
Triassic reef limestones in the Dolomites of northern Italy. Credit: © Matteo Volpone

Four out of six mass extinctions that ravaged life on Earth during the last 300 Ma coincided with large igneous events marked by basaltic flood volcanism. But not all such bursts of igneous activity match significant mass extinctions. Moreover, some rapid rises in the rate of extinction are not clearly linked to peaks in igneous activity. Another issue in this context is that ‘kill mechanisms’ are generally speculative rather than based on hard data. Large igneous events inevitably emit very large amounts of gases and dust-sized particulates into the atmosphere. Carbon dioxide, being a greenhouse gas, tends to heat up the global climate, but also dissolves in seawater to lower its pH. Both global warming and more acidic oceans are possible ‘kill mechanisms’. Volcanic emission of sulfur dioxide results in acid rain and thus a decrease in the pH of seawater. But if it is blasted into the stratosphere it combines with oxygen and water vapour to form minute droplets of sulfuric acid. These form long-lived haze, which reflects solar energy beck into space. Such an increased albedo therefore tends to cool the planet and create a so-called ‘volcanic winter’. Dust that reaches the stratosphere reduces penetration of visible light to the surface, again resulting in cooling. But since photosynthetic organisms rely on blue and red light to power their conversion of CO­2­ and water vapour to carbohydrates and oxygen, these primary producers at the base of the marine and terrestrial food webs decline. That presents a fourth kill mechanism that may trigger mass extinction on land and in the oceans: starvation.

Palaeontologists have steadily built up a powerful case for occasional mass extinctions since fossils first appear in the stratigraphic record of the Phanerozoic Eon. Their data are simply the numbers of species, genera and families of organisms preserved as fossils in packages of sedimentary strata that represent roughly equal ‘parcels’ of time (~10 Ma). Mass extinctions are now unchallengeable parts of life’s history and evolution. Yet, assigning specific kill mechanisms involved in the damage that they create remains very difficult. There are hypotheses for the cause of each mass extinction, but a dearth of data that can test why they happened. The only global die-off near hard scientific resolution is that at the end of the Cretaceous. The K-Pg (formerly K-T) event has been extensively covered in Earth-logs since 2000. It involved a mixture of global ecological stress from the Deccan large igneous event spread over a few million years of the Late Cretaceous, with the near-instantaneous catastrophe induced by the Chicxulub impact, with a few remaining dots and ticks needed on ‘i’s and ‘t’s. Other possibilities have been raised: gamma-ray bursts from distant supernovae; belches of methane from the sea floor; emissions of hydrogen sulfide gas from seawater itself during ocean anoxia events; sea-level changes etc.

The mass extinction that ended the Triassic (~201 Ma) coincides with evidence for intense volcanism in South and North America, Africa and southern Europe, then at the core of the Pangaea supercontinent. Flood basalts and large igneous intrusions – the Central Atlantic Magmatic Province (CAMP) – began the final break-up of Pangaea. The end-Triassic extinction deleted 34% of marine genera. Marine sediments aged around 201 Ma reveal a massive shift in sulfur and carbon isotopes in the ocean that has been interpreted as a sign of acute anoxia in the world’s oceans, which may have resulted in massive burial of oxygen-starved marine animal life. However, there is no sign of Triassic, carbon-rich deep-water sediments that characterise ocean anoxia events in later times. But it is possible that bacteria that use the reduction of sulfate (SO42-) to sulfide (S2-) ions as an energy source for them to decay dead organisms, could have produced the sulfur isotope ‘excursion’. That would also have produced massive amounts of highly toxic hydrogen sulfide gas, which would have overwhelmed terrestrial animal life at continental margins. The solution ofH2S in water would also have acidified the world’s oceans.

Molly Trudgill of the University of St Andrews, Scotland and colleagues from the UK, France, the Netherlands, the US, Norway, Sweden and Ireland set out to test the hypothesis of end-Triassic oceanic acidification (Trudgill, M. and 24 others 2025. Pulses of ocean acidification at the Triassic–Jurassic boundary. Nature Communications, v. 16, article 6471; DOI: 10.1038/s41467-025-61344-6). The team used Triassic fossil oysters from before the extinction time interval. Boron-isotope data from the shells are a means of estimating variations in the pH of seawater. Before the extinction event the average pH in Triassic seawater was about the same as today, at 8.2 or slightly alkaline. By 201 Ma the pH had shifted towards acidic conditions by at least 0.3: the biggest detected in the Phanerozoic record. One of the most dramatic changes in Triassic marine fauna was the disappearance of reef limestones made by the recently evolved modern corals on a vast scale in the earlier Triassic; a so-called ‘reef gap’ in the geological record. That suggests a possible analogue to the waning of today’s coral reefs that is thought to be a result of increased dissolution of CO2 in seawater and acidification, related to global greenhouse warming. Using the fossil oysters, Trudgill et al. also sought a carbon-isotope ‘fingerprint’ for the source of elevated CO2, finding that it mainly derived from the mantle, and was probably emitted by CAMP volcanism. So their discussion centres mainly on end-Triassic ocean acidification as an analogy for current climate change driven by CO2 largely emitted by anthropogenic burning of fossil fuels. Nowhere in their paper do they mention any role for acidification by hydrogen sulfide emitted by massive anoxia on the Triassic ocean floor, which hit the scientific headlines in 2020 (see earlier link).

Detecting oxygenic photosynthesis in the Archaean Earth System

Published on by zooks777Leave a comment

For life on Earth, one of the most fundamental shifts in ecosystems was the Great Oxygenation Event 2.5 to 2.3 billion years (Ga) ago. The first evidence for its occurrence was from the sedimentary record, particularly ancient soils (palaeosols) that mark exposure of the continental surface above sea level and rock weathering. Palaeosols older than 2.4 Ga have low iron contents that suggest iron was soluble in surface waters, i.e. in its reduced bivalent form Fe2+. Sediments formed by flowing water also contain rounded grains of minerals that in today’s oxygen-rich environments are soon broken down and dissolved through oxidising reactions, for instance pyrite (FeS2) and uraninite (UO2). After 2.4 Ga palaeosols are reddish to yellowish brown in colour and contain insoluble oxides and hydroxides of Fe3+ principally hematite (Fe2O3) and goethite (FeO.OH). After this time sediments deposited by wind action and rivers are similar in colour: so-called ‘redbeds’. Following the GOE the atmosphere initially contained only traces of free oxygen, but sufficient to make the surface environment oxidising. In fact such an atmosphere defies Le Chatelier’s Principle: free oxygen should react rapidly with the rest of the environment through oxidation. That it doesn’t shows that it is continually generated as a result of oxygenic photosynthesis. The CO2 + H2O = carbohydrate + oxygen equilibrium does not reach a balance because of continual burial of dead organic material.

Free oxygen is a prerequisite for all multicelled eukaryotes, and it is probably no coincidence that fossils of the earliest known ones occur in sediments in Gabon dated at 2.1 Ga: 300 Ma after the Great Oxygenation Event. However, the GOE relates to surface environments of that time. From 2.8 Ga – in the Mesoarchaean Era – to the late Palaeoproterozoic around 1.9 Ga, vast quantities of Fe3+ were locked in iron oxide-rich banded iron formations (BIFs): roughly 105 billion tons in the richest deposits alone (see: Banded iron formations (BIFs) reviewed; December 2017). Indeed, similar ironstones occur in Archaean sedimentary sequences as far back as 3.7 Ga, albeit in uneconomic amounts. Paradoxically, enormous amounts of oxygen must have been generated by marine photosynthesis to oxidise Fe2+ dissolved in the early oceans by hydrothermal alteration of basalt lava upwelling from the Archaean mantle. But none of that free oxygen made it into the atmosphere. Almost as soon as it was released it oxidised dissolved Fe2+ to be dumped as iron oxide on the ocean floor. Before the GOE that aspect of geochemistry did obey Le Chatelier!

A limestone made of stromatolites

The only likely means of generating oxygen on such a gargantuan scale from the earliest Archaean onwards is through teeming prokaryote organisms capable of oxygenic photosynthesis. Because modern cyanobacteria do that, the burden of the BIFs has fallen on them. One reason for that hypothesis stems from cyanobacteria in a variety of modern environments building dome-shaped bacterial mats. Their forms closely resemble those of Archaean stromatolites found as far back as 3.7 Ga. But these are merely peculiar carbonate bodies that could have been produced by bacterial mats which deploy a wide variety of metabolic chemistry. Laureline Patry of the Université de Bretagne Occidentale, Plouzané, France, and colleagues from France, the US, Canada and the UK have developed a novel way of addressing the opaque mechanism of Archaean oxygen production (Patry, L.A. and 12 others. Dating the evolution of oxygenic photosynthesis using La-Ce geochronology. Nature, v. 642, p. 99-104; DOI: 10.1038/s41586-025-09009-8).

They turned to the basic geochemistry of rare earth elements (REE) in Archaean stromatolitic limestones from the Superior Craton of northern Canada. Of the 17 REEs only cerium (Ce) is capable of being oxidised in the presence of oxygen. As a result Ce can be depleted relative to its neighbouring REEs in the Periodic Table, as it is in many Phanerozoic limestones. Five samples of the limestones show consistent depletion of Ce relative to all other REE. It is also possible to date when such fractionation occurred using 138La– 138Ce geochronology.  The samples were dated at 2.87 to 2.78 Ga (Mesoarchaean), making them the oldest limestones that show Ce anomalies and thus oxygenated seawater in which the microbial mats thrived. But that is only 300 Ma earlier than the start of the GOE. Stromatolites are abundant in the Archaean record as far back as 3.4 Ga, so it should be possible to chart the link between microbial carbonate mats and oxygenated seawater to a billion years before the GOE, although that does not tell us about the kind of microbes that were making stromatolites.

See also: Tracing oxygenic photosynthesis via La-Ce geochronology. Bioengineer.org, 29 May 2025; Allen, J.F. 2016. A proposal for formation of Archaean stromatolites before the advent of oxygenic photosynthesis. Frontiers in Microbiology, v. 7; DOI: 10.3389/fmicb.2016.01784.

Arsenic: an agent of evolutionary change?

Published on by zooks777Leave a comment

The molecules that make up all living matter are almost entirely (~98 %) made from the elements Carbon, Hydrogen, Oxygen, Nitrogen and Phosphorus (CHONP) in order of their biological importance. All have low atomic numbers, respectively 6th, 1st, 8th, 7th and 15th in the Periodic Table. Of the 98 elements found in nature, about 7 occur only because they form in the decay schemes of radioactive isotopes. Only the first 83 (up to Bismuth) are likely to be around ‘for ever’; the fifteen heavier than that are made up exclusively of unstable isotopes that will eventually disappear, albeit billions of years from now. There are other oddities that mean that the 92 widely accepted  to be naturally occurring is not strictly correct. That CHONP are so biologically important stems partly from their abundances in the inorganic world and also because of the ease with which they chemically combine together. But they are not the only ones that are essential.

About 20 to 25% of the other elements are also literally vital, even though many are rare. Most of the rest are inessential except in vanishingly small amounts that do no damage, and may or may not be beneficial. However some are highly toxic. Any element can produce negative biological outcomes if above certain levels. Likewise, deficiencies can result in ill thrift and event death. For the majority of elements, biologists have established concentrations that define deficiency and toxic excess. The World Health Organisation has charted the maximum safe levels of elements in drinking water in milligrams per litre. In this regard, the lowest safe level is for thallium (Tl) and mercury (Hg) at 0.002 mg l-1.Other highly toxic elements are cadmium (Cd) (0.003 mg l-1), then arsenic (As) and lead (Pb) (0.01 mg l-1) that ‘everyone knows’ are elements to avoid like the plague. In nature lead is very rarely at levels that are unsafe because it is insoluble, but arsenic is soluble under reducing conditions and is currently responsible for a pandemic of related ailments, especially in the Gangetic plains of India and Bangladesh and similar environments worldwide.

Biological evolution has been influenced since life appeared by the availability, generally in water, of both essential and toxic elements. In 2020 Earth-logs summarised a paper about modern oxygen-free springs in Chile in which photosynthetic purple sulfur bacteria form thick microbial mats. The springs contain levels of arsenic that vary from high in winter to low in summer. This phenomenon can only be explained by some process that removes arsenic from solution in summer but not in winter. The purple-bacteria’s photosynthesis uses electrons donated by sulfur, iron-2 and hydrogen – the spring water is highly reducing so they thrive in it. In such a simple environment this suggested a reasonable explanation: the bacteria use arsenic too. In fact they contain a gene (aio) that encodes for such an eventuality. The authors suggested that purple sulfur bacteria may well have evolved before the Great Oxygenation Event (GOE). They reasoned that in an oxygen-free world arsenic, as well as Fe2+ would be readily available in water that was in a reducing state, whereas oxidising conditions after the GOE would suppress both: iron-2 would be precipitated as insoluble iron-3 oxides that in turn efficiently absorb arsenic (see: Arsenic hazard on a global scale, May 2020).

Colour photograph and CT scans of Palaeoproterozoic discoidal fossils from the Francevillian Series in Gabon. (Credit: El Albani et al. 2010; Fig. 4).

A group of geoscientists from France, the UK, Switzerland and Austria have investigated the paradox of probably high arsenic levels before the GOE and the origin and evolution of life during the Archaean  (El Khoury et al. 2025. A battle against arsenic toxicity by Earth’s earliest complex life forms. Nature Communications, v. 16, article 4388; DOI: 10.1038/s41467-025-59760-9). Note that the main, direct evidence for Archaean life are fossilized microbial mats known as stromatolites, some palaeobiologists reckoning they were formed by oxygenic photosynthesising cyanobacteria others favouring the purple sulfur bacteria (above). The purple sulfur bacteria in Chile and other living prokaryotes that tolerate and even use arsenic in their metabolism clearly evolved that potential plus necessary chemical defence mechanisms, probably when arsenic was more available in the anoxic period before the GOE. Anna El Khoury and her colleagues sought to establish whether or not eukaryotes evolved similar defences by investigating the earliest-known examples; the 2.1 Ma old Francevillian biota of Gabon that post-dates the GOE. They are found in black shales, look like tiny fried eggs and are associated with clear signs of burrowing. The shales contain steranes that are breakdown products of steroids, which are unique to eukaryotes.

The fossils have been preserved by precipitation of pyrite (Fe2S) granules under highly reducing conditions. Curiously, the cores of the pyrite granules in the fossils are rich in arsenic, yet pyrite grains in the host sediments have much lower As concentrations. The latter suggest that seawater 2.1 Ma ago held little dissolved arsenic as a result of its containing oxygen. The authors interpret the apparently biogenic pyrite’s arsenic cores as evidence of the organism having sequestered As into specialized compartments in their bodies: their ancestors must have evolved this efficient means of coping with significant arsenic stress before the GOE. It served them well in the highly reducing conditions of black shale sedimentation. Seemingly, some modern eukaryotes retain an analogue of a prokaryote As detoxification gene.

Impact debris in Neoproterozoic sediments of Scotland and biological evolution?

Published on by zooks777Leave a comment
False-colour electron microscope image of a shocked grain of zircon recovered from the Stac Fada Member. The red and pink material is a high-pressure polymorph of zircon, arranged in shock lamellae. Zircon is rendered in cyan, some of which is in granulated form. Credit: Kirkland et al. 2025, Fig 2C

Judging by its content of shards and spherules made of murky green glass, one of the lowest units in the Torridonian continental sediments of NW Scotland had long been regarded as simply red sandstone that contained volcanic debris. This Stac Fada Member was thus celebrated as the only sign of a volcanic contribution to a vast thickness (up to 2.5 km) of Neoproterozoic lake and fluviatile sediments. Current flow indicators suggested that the Torridonian was laid down by large alluvial fans derived by erosion of much older crystalline basement far to what is today the west. That is, the Archaean core of the ancient continent of Laurentia, now the other side of the North Atlantic. In 2002 more sophisticated sedimentological and geochemical analysis of the Stac Fada Member revealed a surprise: it contains anomalously elevated platinum-group elements, quartz grains that show signs of shock and otherworldly chromium isotope concentrations. The 10 m thick bed is made from ejecta, perhaps from a nearby impact crater to the WNW concluded from brittle fractures that may have been produced by the impact. Some idea of its age was suggested by Ar-Ar dating of feldspar crystals (~1200 Ma) believed to have formed authigenically in the hot debris. Being the only decent impactite known in Britain, it continues to attract attention.

A group of geoscientists from Western Australia, NASA and the UK, independent of the original discoverers, have now added new insights ( Kirkland, C.L. and 12 others 2025. A one-billion-year old Scottish meteorite impact. Geology, v. 53, early online publication; DOI: 10.1130/G53121.1). They dated shocked zircon grains using U-Pb analyses at 990 ± 22 Ma; some 200 Ma younger than the previously dated, authigenic feldspars.  Detrital feldspar grains in the Stac Fada Member yield Rb-Sr radiometric ages of 1735 and 1675, that are compatible with Palaeoproterozoic granites in the underlying Lewisian Gneiss Complex.

Photomicrograph of Bicellum brazieiri: scale bar = 10μm; arrows point to dark spots that may be cell nuclei (credit: Charles Wellman, Sheffield University)

In a separate publication (Kirkland, C.L et al 2025. 1 billion years ago, a meteorite struck Scotland and influenced life on Earth. The Conversation, 29 April 2025) three of the authors take things a little further, as their title suggests. In this Conversation piece they ponder, perhaps unwarily, on the spatial and temporal association of the indubitable impact with remarkably well-preserved spherical fossils found in Torridonian lake-bed sediments (Bicellum brasieri, reported in Earth-logs in May 2021), which are the earliest-known holozoan animal ancestors. The Torridonian phosphatic concretions in which these important fossils were found at a different locality are roughly 40 Ma younger than the Stac Fada impactite. The authors of the Conversation article appeal to the residual thermal effect of the impact as a possible driver for the appearance of these holozoan organisms. Whether a residual thermal anomaly would last long enough for them to evolve to this biological status would depend on the magnitude of the impact, of which we know nothing.  Eukaryote fossils are known from at least  650 Ma older sedimentary rocks in northern China and perhaps as far back as 2.2 Ga in a soil that formed in the Palaeoproterozoic of South Africa. Both the Torridonian organism and impactite were found in a small area of fascinating geology that has been studied continuously in minute detail since Victorian times, and visited by most living British geologists during their undergraduate days. Ideas will change as curiosity draws geologists and palaeobiologists to less-well studied sites of Proterozoic antiquity, quite possibly in northern China.

A fully revised edition of Steve Drury’s book Stepping Stones: The Making of Our Home World can now be downloaded as a free eBook

A sign of life on another planet? Should we be excited?

Published on by zooks777Leave a comment

Judging by the coverage in the media, there is huge excitement about a possible sign of life on a very distant planet. It emerged from a Letter to The Astrophysical Journal posted by a British-US team of astronomers led by Nikku Madhusudhan that was publicised by the Cambridge University Press Office (Madhusudhan, N.et al. 2025. New Constraints on DMS and DMDS in the Atmosphere of K2-18 b from JWST MIRI. The Astrophysical Journal, v. 983, article adc1c8; DOI: 10.3847/2041-8213/adc1c8). K2-18 b is a planet a bit smaller than Neptune that orbits a red dwarf star (K2-18) about 124 light years away. The planet was discovered by NASA’s now-defunct Kepler space telescope tasked with the search for planets orbiting other stars. An infrared spectrometer on the Hubble Space Telescope revealed in 2019 that the atmosphere of K2-18 b contained water vapour, making the planet a target for further study as it may possess oceans. The more sophisticated James Webb Space Telescope IR spectrometer was trained on it a year later to reveal methane and CO2: yet more reason to investigate more deeply, for water and carbon compounds imply both habitability and the potential for life forms being there.

The latest results suggest that that the atmosphere of K2-18 b may contain simple carbon-sulfur gases: dimethyl sulfide ((CH3)2S) and dimethyl disulfide (CH3SSCH3). Bingo! for exobiologists, because on Earth both DMS and DMDS are only produced by algae and bacteria. Indeed they are responsible for the odour of the seaside. They became prominent in 1987 when biogeochemist James Lovelock fitted them into his Gaia Hypothesis. He recognised that they encourage cloud formation and thus increase Earth’s reflectivity (albedo) and also yield sulfuric acid aerosols in the stratosphere when they oxidise: that too increases albedo. DMS generates a cooling feedback loop to counter the warming feedback of greenhouse emissions. That is an idea of planetary self-regulation not much mentioned nowadays. Such gases were proposed by Carl Sagan as unique molecular indicators that could be used to search for extraterrestrial life.

The coma of Comet Churyumov-Gerasimenko yielded both dimethyl sulfide and amino acids to the mass spectrometer carried by ESA’s Rosetta. Credit: ESA.

The discovery of possible DMS and DMDS in K2-18 b’s atmosphere is, of course, currently under intense scientific scrutiny. For a start, the statistics inherent in Madhusudhan et al.’s methodology (3σ or 99.7% probability) fall short of the ‘gold standard’ for discoveries in physics (5σ or 99.99999% probability). Moreover, there’s also a chance that exotic, inorganic chemical processes could also create the gases, such as lightning in an atmosphere containing C, H and S. But this is not the first time that DMS has been discovered in an extraterrestrial body. Comets, having formed in the infancy of the Solar System much further from the Sun than any planets, are unlikely to be ‘teeming with life’. The European Space Agency’s Rosetta spacecraft chased comet 67P/Churyumov-Gerasimenko for 2 years, directly sampling dust and gas that it shed while moving closer to the Sun. A single day’s data from Rosetta’s mass spectrometer showed up DMS, and also amino acids. Both could have formed in comets or interstellar dust clouds by chemistry driven by radiation, possibly to contaminate planetary atmospheres. Almost certainly, further remote sensing of K2-18 b will end up with five-sigma precision and some will say, ‘Yes, there is life beyond Earth!’ and celebrate wildly. But that does not constitute proof, even by the ‘weight of evidence’ criterion of some judiciaries. To me such a conclusion would be unseemly romanticism. Yet such is the vastness of the material universe and the sheer abundance of the elements C H O N and P that make up most living matter that life elsewhere, indeed everywhere, (but not life as we know it) is a near certainty. The issue of intelligent lifeforms ‘out there’ is, however, somewhat less likely to be resolved . . .