Geobiology, palaeontology, and evolution – Page 3

Pushing back the origin of photosynthesis

Published on February 27, 2013 by zooks7771 Comment

More than a decade ago the oldest sedimentary rocks in the world at Isua in West Greenland hit the headlines, and not for the first time. Inclusions of graphite in crystals of the mineral apatite from the Isua supracrustals had yielded carbon isotopes unusually deficient in ¹³C relative to ¹²C, which is often regarded as a sign that life was involved in the carbon cycle at the time. The Isua rocks have been reliably dated at around 3.8 billion years (Ga) so that added over 400 Ma to the time at which life was present on Earth. Sedimentary rocks formed at 3.4 Ga contain the first tangible signs in the form of stromatolites thought to have been secreted by biofilms of blue-green bacteria which are oxygen-generating photosynthesisers. Sadly, limestones at Isua, indeed all the putative sedimentary rocks there were metamorphosed and deformed plastically so that such features, if they were ever present, had been obliterated. Apatite was thought to be so strong and resistant to heating that carbon within its crystals would have preserved original isotopic ‘signatures’. Detailed studies to test this hypothesis refuted the early age for life, which reverted back to around 3.4 Ga. But Isua presents too good an opportunity for its geochemical secrets to be left uninvestigated.

The latest targets are its iron isotopes. Isua includes metamorphosed banded ironstones composed largely of magnetite and quartz. Magnetite is iron oxide (Fe₃O₄) and begs the question of how such an oxygen-rich mineral formed in such volumes in sediment if photosynthesizing life had not made elemental oxygen available. That would oxidize soluble ferrous ions (Fe²⁺) to the insoluble ferric form (Fe³⁺) in order for iron oxide to precipitate from sea water in large amounts. There is no other means known for oxygen to be produced in a planet’s surface environment. A team at the University of Wisconsin’s NASA Astrobiology Institute, led by Andrew Czaja and joined by Stephen Moorbath of the University of Oxford, who set the entire West Greenland story rolling by leading its geochronological investigation since the early 1970s, have made a breakthrough (Czaja, A.D. et al. 2013. Biological Fe oxidation controlled deposition of banded iron formation in the ca. 3770 Ma Isua Supracrustal Belt (West Greenland). Earth and Planetary Science Letters, v. 363, p. 192-203).

Any element that has more than one naturally occurring isotope offers the possibility of studying various kinds of chemical process by looking for changes to the relative proportions of the different isotopes. Having different relative atomic masses isotopes of an element have slightly different chemical properties so that one is likely to be more favoured in a reaction than another. In the case of iron, the most important reactions in surface processes are those that depend on reducing and oxidising conditions, i.e. producing soluble Fe²⁺ and insoluble Fe³⁺ respectively. Oxidation and precipitation of iron oxides and hydroxides tend to favour the heavier isotope ⁵⁶Fe over the more common ⁵⁴Fe resulting in an increase in the ⁵⁶Fe/⁵⁴Fe ratio (δ⁵⁶Fe). This is found throughout the Isua ironstones, but may again reflect metamorphism. However, such was the detail of this study that δ⁵⁶Fe values were measured for many individual bands. Instead of showing roughly the same values throughout the rock, each band had a different value. That strongly suggests that values produced during sedimentation had been preserved. It seems that a bacterial mechanism of oxidation was involved. Moreover, by comparing the 3.8 Ga Isua ironstones with examples dated at 2.5 Ga from Australia the team found different isotopic values that implicates different kinds of bacteria involved in producing apparently similar rock types. The twist is that the most likely bacterial type involved at Isua may have been a photosynthesiser, but not of the kind that releases elemental oxygen instead transferring it from water to combine directly with the ions of iron that its photosynthesis had oxidised. The younger ironstones seem more likely to have involved cyanobacteria that do excrete oxygen; shortly after their formation the Earth’s surface increasingly became oxygen-bearing.

Throughout the Precambrian, BIFs appear and then vanish from the record only to reappear when geologist least expect them, for instance around the time of the Snowball Earth events in the Neoproterozoic Era. Iron isotopes could well become handy tools to probe the processes that formed them.

Rusty rocks reveal ancient origin of photosynthesis (newscientist.com)

K-T (K-Pg) event: can the havering stop now, please?

Published on February 19, 2013 by zooks7772 Comments

Since 1980, when Alvarez père et fils discovered signs of a globe-affecting impact event in rocks marking the stratigraphic boundary at the end of the Mesozoic Era –between the Cretaceous and Palaeogene Periods – there has been continual bickering over the cause of the mass extinction at that time. Unlike other mass extinctions that one marked the end of an Era dominated in the popular mind by the iconic dinosaurs. Besides that focus, many geologists have been averse to external, ‘wham-bam-thank-you-ma’am’ explanations for shifts in the fossil record: a sort of Lyellian view that geological change had to be at the pace of the humble tortoise and must be due to something in the Earth system itself. Then a majority, this conservative faction looked instead to the effects of the voluminous basalt flood that had affected western India at around the same time. Incidentally, that apparent match to the end-Mesozoic extinction sparked an interest in volcanic associations with other mass extinctions.

Discovery by geophysicists of evidence for a large almost completely buried impact basin, about 180 km across, centred in the Caribbean off Mexico’s Yucatan Peninsula swayed opinion towards an extraterrestrial cause when it became clear that the impact had occurred around the time of the K-Pg boundary, then placed at 65 Ma. Soon there were claims that the Deccan Traps had erupted in less than a million years at that time, together with doubts cast on the actual age of the Chicxulub crater. The time-spread of the Deccan volcanism enlarged with more dating to between 68 and 60 Ma; and so the to-ing and fro-ing continued, gleaning sizeable grants for entrepreneurial geoscientists keen on one or other of what were becoming bandwagon topics. Then the ‘golden spike’ marking the time of the mass extinction became the subject of controversy. A means of precise dating is to examine signs in sediments of cyclical climate change using the Milankovich approach, although before 50 Ma only the 405 ka cyclicity predicted from astronomy is readily detected. Using well-dated volcanic horizons to calibrate such a stratigraphic dating method might be the key, but it became apparent that 65.3, 65.7 or 66.1 Ma all seemed to have the same likelihood.

The two kill mechanisms that had been proposed are in fact very different, not merely in terms of what might have happened to atmospheric chemistry, climate, photosynthesis and so on, but concerning their timing. Repeated episodes of major basalt eruption every 100 ka or so would have had a chronic and perhaps cumulative effect on the Earth’s biota; i.e. even a 10 Ma spread for Deccan basalt floods bracketing the actual die-off would be acceptable as a cause. An impact however takes no more than a second to occur, because of the hypersonic speed induced by Earth’s gravity as well as that of the asteroid through the Solar System. All its immediate effects – entry flash; crater excavation; debris fall-out; atmospheric dust and toxic gas accumulation; climate change; acid rain and tsunamis – would have been done and dusted over a matter of a few thousand years. The Chicxulub impact would have been a catastrophe that was instantaneous in geological terms. Its occurrence would need to bear the same date as the mass extinction itself to be seen as incontrovertible; well, at least to the majority of geoscientists. That point seems to have been reached.

As well as the crater, Chicxulub scattered molten rock far and wide to appear in the ‘boundary layer’ as glass spherules, which are dateable using radiometric means. So too is the timing of the mass extinction itself, provided suitable materials can be found above and below the strata across which fossil abundances change so dramatically. Paul Renne of the University of California, Riverside, and colleagues from the US, the Netherlands and Britain dated impact glasses from Haiti and volcanic ash from the late Cretaceous to early Palaeogene terrestrial sediments of Montana, USA that bracket the extinction event using multiple argon-isotope studies and the ⁴⁰Ar-³⁹Ar method (Renne, p.r. and 8 others 2013. Time scales of critical events around the Cretaceous-Paleogene boundary. Science, v. 339, p.684-687. The glasses come out at 66.038+0.049 Ma, while the Ar-Ar age of volcanic ash just above the carbon-isotope anomaly that marks the world-wide disappearance of a large proportion of living biomass is 66.019+0.021 Ma. As they say, the ages are ‘within error’ and the error is very small indeed.

So, does this work mark the end of the K-Pg controversy? Probably not, as very large sums of grant money are still tied up with on-going studies. Perhaps to assuage the fears of all those still financially addicted to answering ‘what killed the dinosaurs?’, The abstract of the paper reads thus’ ‘The Chicxulub impact likely triggered a state shift of ecosystems already under near-critical stress’.

Artist's impression of the common ancestor of placental mammals (Credit: Science magazine) — Artist’s impression of the common ancestor of placental mammals (Credit: Science magazine)

Interestingly, in the very same issue of Science came a research article that reexamines taxonomy of 86 key living and fossil placental mammals in the light of genetic sequencing, to locate startigraphically their earliest common ancestor (O’Leary, M.A. and 22 others 2013. The placental mammal ancestor and the post-K-Pg radiation of placentals. Science, v. 339, p. 662-667). That seems to wrap up, for now, another controversy; did diminutive placental mammals arise unnoticed beneath the gaze of mighty dinosaurs, or what? It seems that some precursor mammals were able to diversify and produce a line whose fetuses grow and are nourished in the mothers uterus attached to a placenta, before live birth at an advanced stage of development, once opportunities for diversification emerged after the K-Pg event. Morphologically, the ancestor of everything from a naked mole rat to a blue whale and, of course, ourselves, seems to have been a sneaky-looking little beast with a long nose and pointy teeth. It does look like it, or its predecessor, could have scuttled unscathed amongst the leaf litter as dinosaurs engaged in their death prance…

Rebuilding Our Extinct Ancestor (ribosometranslation.wordpress.com)
What Killed Dinosaurs: New Ideas About the Wipeout (news.nationalgeographic.com)

The Ediacaran fossils: a big surprise

Published on December 17, 2012 by zooks7772 Comments

English: Photograph showing the 'golden spike'... — Edicara sandstones in the Flinders Ranges of South Australia (credit: Wikipedia).

The first macroscopic life forms were the enigmatic bag-like and quilted fossils in sedimentary rocks dating back to 635 Ma in Australia, eastern Canada and NW Europe. They are grouped as the Ediacaran Fauna named after the Ediacara Hills in South Australia where they are most common and diverse. Generally they are not body fossils but impressions of soft-bodied organisms, often in sandstones rather than muds. Some are believed to be animals that absorbed nutrients through their skin, whereas others are subjects of speculation. One thing seems clear; these first metazoans arose because of some kind of trigger provided by the global glacial conditions that preceded their appearance. It has always been assumed that, whatever they were, Ediacaran organisms lived on the sea floor, probably in shallow water. New sedimentological evidence found in the type locality by Gregory Retallack of the University of Oregon seems set to force a complete rethink about these hugely important life forms (Retallack, G.J 2012. Ediacaran life on land. Nature (online), doi:10.1038/nature11777). So momentous are his conclusions that they form the subject of a Nature editorial in the 13 December 2012 issue.

Retallack, a specialist on ancient soils of the Precambrian, examined reddish facies of the Ediacara Member of the Rawnsley Quartzite of South Australia, whose previous interpretation have a somewhat odd background. Originally regarded as non-marine, before their fossils were discovered, when traces of jellyfish-like organisms turned up this view was reversed to marine, the red coloration being ascribed to deep Cretaceous weathering. A range of features, such as clasts of red facies in grey Ediacaran rocks, the presence of feldspar in the red facies – unlikely to have survived deep weathering – bedding surfaces with textures very like those formed by subaerial biofilms, and desiccation cracks, suggest to Retallack that the red facies represents palaeosols in the sedimentary sequence. Moreover, some features indicate a land surface prone to freezing from time to time. The key observation is that this facies contains Ediacaran trace fossils representing many of the forms previously regarded as marine animals of some kind, including Spriggina, Dickinsonia and Charnia on which most palaeontologists would bet good money that they were animals, albeit enigmatic ones.

English: Cropped and digitally remastered vers... — Specimen of Edicaran Dickinsonia (credit: Wikipedia)

If Retallack’s sedimentological observations are confirmed then organisms found in the palaeosols cannot have been animals but perhaps akin to lichens or colonial microbes, and survived freezing conditions. As they occur in other facies more likely to be subaqueous, then they were ‘at home’ in a variety of ecosystems. As the Nature editorial reminds us, from the near-certainty that early macroscopic life was marine there is a chance that views will have to revert to a terrestrial emergence first suggested in the 1950s by Jane Grey. Uncomfortable times lie ahead for the palaeontological world.

Ediacaran study shakes the tree of life (abc.net.au)
Controversial claim puts life on land 65 million years early (nature.com)
Were Weirdo Ediacarans Really Lichens, Fungi, and Slime Molds? (blogs.scientificamerican.com)

Early animals and Snowball Earth

Published on October 8, 2012 by zooks777Leave a comment

"SNOWBALL EARTH" - 640 million years ago — The Earth 640 million years ago during the Marinoan ‘Snowball’ event (credit: Cornell University via Flickr)

Palaeobiologists generally believe that without a significant boost to oxygen levels in the oceans macroscopic eukaryotes, animals in particular, could not have evolved. Although the first signs of a rise in atmospheric oxygen enter the stratigraphic record some 2.4 billion years ago and eukaryote microfossils appeared at around 2 Ga, traces of bulky creatures suddenly show up much later at ~610 Ma with possible fossil bilaterian embryos preserved in 630 Ma old sediments. An intriguing feature of this Ediacaran fauna is that it appeared shortly after one of the Neoproterozoic global glaciations, the Marinoan ‘Snowball’ event: a coincidence or was there some connection? It has looked very like happenstance because few if any signs of a tangible post-Marinoan rise in environmental oxygen have been detected. Perhaps the sluggish two billion-year accumulation of free oxygen simply passed the threshold needed for metazoan metabolism. But there are other, proxy means of assessing the oxidation-reduction balance, one of which depends on trace metals whose chemistry hinges on their variable valency. The balance between soluble iron-2 and iron-3 that readily forms insoluble compounds is a model, although iron itself is so common in sediments that its concentration is not much of a guide. Molybdenum, vanadium and uranium, being quite rare, are more likely to chart subtle changes in the redox conditions under which marine sediments were deposited.

Swapan Sahoo of the University of Nevada and colleagues from the USA, China and Canada detected a marked increase in the variability of Mo, V and U content of the basal black shales of the Doushantuo Formation of southern China, which contain the possible eukaryote embryos (Sahoo, S.K and 8 others 2012. Ocean oxygenation in the wake of the Marinoan glaciation. Nature, v. 489, p. 546-549). These rocks occur just above the last member of the Marinoan glacial to post-glacial sedimentary package and are around 632 Ma old. Since the black shales accumulated at depths well below those affected by surface waves that might have permitted local changes in the oxygen content of sea water the geochemistry of their formative environment ought not to have changed if global chemical conditions had been stable: the observed fluctuations may represent secular changes in global redox conditions. The earlier variability settles down to low levels towards the top of the analysed sequence, suggesting stabilised global chemistry.

What this might indicate is quite simple to work out. When the overall chemistry of the oceans is reducing Mo, V and U are more likely to enter sulfides in sediments, thereby forcing down their dissolved concentration in sea water. With a steady supply of those elements, probably by solution from basalt lavas at ocean ridges, sedimentary concentrations should stabilise at high levels in balance with low concentrations in solution. If seawater becomes more oxidising it holds more Mo, V and U in solution and sediment levels decline. So the high concentrations in sediments mark periods of global reducing conditions, whereas low values signal a more oxidising marine environment. Sahoo et al.’s observations suggest that marine geochemistry became unstable immediately after the Marinoan glaciation but settled to a fundamentally more oxidising state than it had been in earlier times, perhaps by tenfold increase in atmospheric oxygen content. So what might have caused this and the attendant potential for animals to get larger in the aftermath of the Snowball Earth event? One possibility is that the long period of glaciers’ grinding down continental crust added nutrients to the oceans. Once warmed and lit by the sun they hosted huge blooms of single-celled phytoplankton whose photosynthesis became an oxygen factory and whose burial in pervasive reducing conditions on the sea bed formed a permanent repository of organic carbon. The outcome an at-first hesitant oxygenation of the planet and then a permanent fixture opening a window of opportunity for the Ediacarans and ultimately life as we know it.

Extreme climate change linked to early animal evolution (sciencedaily.com)

Burrowers: knowing front from back

Published on July 10, 2012 by zooks777Leave a comment

In sedimentary rocks below the base of the Cambrian there is not only a dearth of body fossils, but signs of creatures burrowing and stirring up the sediment are most uncommon. A burrower needs several criteria to be fulfilled: a supply of oxygen; sufficient food; a body able to penetrate and an ability to move back and forth, but forth would probably do fine, provided the animal could turn corners. The amount of oxygen in bottom waters would have influenced its availability beneath the seabed. Whatever the conditions, dead organic matter falls and is buried by sediment before it is oxidised away, even nowadays. There is little sign that there was any marked change between the oxygenation of the planet just before and after the start of the Cambrian Period, so the main control over burrowing is that of animal morphology.

Many modern burrowing animals are pretty flaccid but moving sediment aside and upwards demands some muscle power. Most important, the creature needs a means of navigation, albeit of a rudimentary kind, and since what goes in beneath the surface – food – must go out – excreta – there must be a front- and a back end. That ‘fore-and-aft’ symmetry is the essential feature of bilaterian animals. Only a limited range of animal taxa don’t have that built-in. Sponges are the most obvious example, having no discernible symmetry of any kind. Radially symmetrical animals such as jellyfish and coral polyps only have a top and a bottom. An absence of inbuilt horizontal directionality stops non-bilaterians from burrowing in any shape or form. But, so what?

The vast majority of animals have some kind of bilateral symmetry; even echinoderms have it from their 5-fold symmetry that is also the simplest kind of radiality. By the start of the Cambrian, not only had bilaterians split off from the less symmetrical but almost all the phyla living today, and several that became extinct in the last 542 Ma, have representatives in the Cambrian fossil record. The only logical conclusion is that emergence of bilaterians and their fundamental diversification took place in the Precambrian: they are absent from earlier strata only because they had no hard parts. Comparing the DNA of living representatives of the main bilaterian phyla and with that of non-bilaterians can help date the times of genetic and morphological separation, but only crudely. This ‘molecular clock’ approach points to some time between 900 and 650 Ma ago for the last common ancestor of bilaterians.

pecoits1HR — Uruguayan fossil burrows from late Neoproterozoic (Credit: Pecoits, E. et al. 2012)

Getting a handle on the minimum time for the split depends either on finding fossils or unequivocal signs of bilaterian activity. The oldest unequivocally bilaterian fossils occur in rocks about 550 Ma old, which doesn’t take us much further back than the base of the Cambrian. But there are trace fossils that are significantly more ancient (Pecoits, E. et al. 2012. Bilaterian burrows and grazing behaviour at >585 million years ago. Science, v. 336, p. 1693-1696). They are tiny burrows in fine-grained sediments from Uruguay, so tiny that there is a chance that they may be traces of grazing bacterial films on the seabed rather than beneath it. The decider is the mechanics of trace fossil formation. Surface tracks only a millimetre or so across would only penetrate the biofilm, so on lithification they would simply disappear. Burrows on the other hand penetrate the sediment itself to get at food items. Even if this was a biofilm, the track would be in sediment above the film, so compaction would preserve it. The Uruguayan exam-[les are exquisite horizontal burrows, and they push back the minimum age for the origin of the bilaterians to at least 40 Ma older than the start of the Cambrian. In fact 585 Ma is a minimum age for the sediments as it is the U-Pb age of zircons in a granite that intrudes and metamorphoses them.

An equally significant observation is that the burrows only appear towards the end of a glacial episode – probably the last of the Neoproterozoic ‘Snowball Earth’ events – as marked by tillites below the burrowed shales and occasional ‘dropstones’ in them. Could it be that the climatic and other stresses of a global glaciation triggered the fundamental division among the Animalia?

Observatory: Slugs’ Tunnels Shed Light on Early Bilateral Animals (nytimes.com)

Origin of the arms race

Published on April 30, 2012 by zooks7771 Comment

Global paleogeographic reconstruction of the E... — Global paleogeographic reconstruction of the Earth in the early Cambrian period 540 million years ago. (credit:Ron Blakey, Northern Arizona University)

Palaeontologists generally agree on one broad aspect of animal evolution: the central role of predation versus defence in animal diversification to occupy different ecological niches. Indeed that co-relation has to an extent been responsible for the diversification of potentially habitable niches themselves. Armour and arms form a dialectic within the animal world, but one that only rose to dominate when hard materials became an integral part of animal morphology, allowing some to bite, gnaw or rasp and others to develop shelly or horny skeletons. The Kingdom Animalia within the domain of the eukaryotes – organisms based on cells that bear a nucleus – is united by one life style, that of feeding directly or indirectly on other living things. They are heterotrophs unable to generate energy and tissue through the fundamental harnessing of chemistry and physics to use the inorganic world directly, as do autotrophs. One of the earliest discoveries about the history of animals was that fossils in the widely accepted meaning of the word appeared suddenly in the geological record, earlier rocks containing virtually no tangible signs of life: fossils explode in numbers from the start of the Cambrian Period at 542 Ma. Subsequently, geologists did discover imprints of clearly quite complicated organisms in rocks a few tens of million years older than the start of the Cambrian. But these were flaccid, bag like creatures that recent research has shown to rely on filtering microorganisms from water or directly absorbing organic matter through their skin.

Cropped and digitally remastered version of an... — An animal from the late Precambrian(Photo credit: Wikipedia)

Another feature of sediments of the oldest Cambrian is that in many parts of the world they rest with or=profound unconformity on deformed older rocks of Precambrian age. Throughout Britain the lowest Cambrian rocks are almost pure quartz sandstones that rest upon older more complex rocks ranging from only a few tens of million years older than 542 Ma to some of the oldest rocks in Europe, the Lewisian complex dating back 3 billion years. Many of the hills of North West Scotland have a gleaming white cap of Lower Cambrian quartzite above what has been termed the Great Unconformity where it occurs in Arizona’s Grand Canyon. Sedimentary sequences that continuously record the Precambrian to Cambrian transition and the biological explosion at the juncture are rare. But they show two curious features in sediments that immediately predate those bearing recognisable fossils: a complete lack of evidence for burrowing and millimetre-scale shell-like bodies made of calcium phosphate and carbonate, which are thought to have adorned the skins of otherwise unprotected animals.

Português: Classe Radiodonta — Creatures from the Cambrian Period (credit: Wikipedia)

Calcium, while a very common element is one of the most dangerous to life. Traces are essential for the signalling that goes on in cell metabolism, and too little snuffs out those vital processes. Yet too much – still a very low concentration in cell cytoplasm – results in the growth of minute mineral crystals within cells, also spelling cell death. This results from the limited solubility of calcium in water, compared with those of other common metals. At an early stage in evolution cells developed means of restricting the admission of calcium ions and efficient means of expelling excess amounts of calcium. The ubiquitous occurrence of Ca-rich marine limestones throughout the geological record bears witness to two things: the abundance of calcium ions in seawater; a closer look reveals that a great many limestones, going back some 3.5 billion years show traces of biomineralisation that helped form the limey sediments. In the second case, the calcium carbonate in most Precambrian limestones was secreted by photosynthetic blue-green bacteria in minutely thing layers, probably in the form of a slimy film excreted to avoid calcium toxicity. Palaeontologists have long suspected that the earliest skeletal materials formed by animals evolved from the need to excrete biomineralised films by turning a metabolic necessity into functional and integral parts of their body plans: arms and armour. Yet limestones are not rare signs of the presence of a dissolved calcium threat, so why the sudden adoption of waste products in this way?

A fairly old hypothesis is that calcium in seawater must have risen above a threshold that posed toxic threat to all living things and excretion had to increase to maintain the balance, perhaps matched with increasing sizes of animals in the late Precambrian. Only recently has support been found for this suggested evolutionary trigger, initially from analysis of brines trapped in crystalline materials within sediments, such as salt (NaCl). But the very presence of such halite in a sediment is a universally accepted sign of evaporation increasing ionic concentrations in isolated seawater lagoons, whereas a general increase in marine calcium would be needed to present sufficient chemical stress that the whole of animal evolution would require a step-change for survival. It turns out that support for the hypothesis stems from two isotopic systems most usually associated with dating the formation and weathering of continental crust: those of strontium and neodymium. The global record of ratios of ⁸⁷Sr/⁸⁶Sr and ¹⁴³Nd/¹⁴⁴Nd show unusually large changes in the run-up to the Cambrian Period, the first rising to the highest level recorded in geological history and the second reaching a historic nadir during the Cambrian. This anti-correlation signifies the greatest chemical weathering of older continental crust in the history of the Earth (Peters, S. & Gaines, R.R. 2012. Formation of the ‘Great Unconformity’ as a trigger for the Cambrian explosion. Nature, v. 484, p. 363-366). Not only would this have poured dissolved ions, including those of calcium, into the oceans and raised their concentrations in seawater, but vast areas of the continents would have been eroded to form huge coastal plains, ripe for marine inundation. The last is exactly what the near-universal unconformity at the base of the Cambrian signifies. Presaging this long drawn-out grinding of continents to their gums had been a protracted bout of continental assembly to form the Rodinia supercontinent around 1000 Ma though collision and mountain building. Then Rodinia broke apart, its fragments being driven by plate tectonics to reassemble, along with vast chains of new crust formed in volcanic island arcs, by yet more orogenesis: tectonically high-energy times matched by the processes of denudation on land.

A nice example of planetary interconnectedness on the largest scale with the greatest conceivable consequences, for we vertebrates anyhow. This comes as a great comfort to me in the twilight of my career, since in 1999 I stuck out my neck with a similar concept in Stepping Stones only to meet a suitably stony silence.

Missing rocks may explain why life started playing shell games (arstechnica.com)
560 Million Year Old Animal (weeklyworldnews.com)
The Great Unconformity (quantumtunnel.wordpress.com)

A cuddly tyrannosaur

Published on April 11, 2012 by zooks777Leave a comment

Feathered Dinosaurs 1 — Feathered dinosaur Deinonychus (Photo credit: Aaron Gustafson)

Feathered and fluffy dinosaurs in the families that may have led to birds have become almost commonplace, thanks to wonderful preservation in some Chinese Mesozoic sedimentary rocks (see http://earth-pages.co.uk/2003/03/01/flying-feathers/) and what has become a cottage industry for local people, under professional direction. Most have been small theropods in the Coelurosauria taxonomic branch that span the Jurassic and Cretaceous Periods. The famous Lower Cretaceous Liaoning lagerstätte in NE China recently yielded something truly awesome: three well-preserved specimens of a feathered dinosaur almost as large as the giant tyrannosaurs of the Late Cretaceous (i.e. > 1 tonne in life) (Xu, X. et al.2012. A gigantic feathered dinosaur from the Lower Cretaceous of China. Nature, v. 484. P. 92-95). In fact Yutyrannus huali (‘beautiful feathered tyrant)is a member of the same subgroup as the Upper Cretaceous T. rex and was clearly a top predator in its day. Equally fortuitous is that the three specimens comprise one with a living body weight of about 1.4 t, the other two being between 500 and 600 kg. Various differences between the largest and the two smaller individuals suggest that thee find represents two generations, the largest perhaps 8 years older than the two smaller ones. All three preserve densely packed filaments suggesting that they were fluffy rather than truly feathered. So why the difference from its probably scaly relative tyrannosaurs from about 50 Ma later?

Around 125 Ma global climate was considerably cooler than the Late Cretaceous greenhouse world, Liaoning probably having mean annual air temperatures around 10°C compared with 18°C late in the Period. Yutyrannus huali and some of its contemporary theropods probably evolved high TOG insulation to ensure all-season sprightliness. It is also possible that a display function was also involved, as seems to have been the case for other dinosaurs.

One-Ton Feathered Dinosaur Found: Fluffy and Fierce (news.nationalgeographic.com)
http://earth-pages.co.uk/2011/07/28/feathers-will-fly-archaeopteryx-relegated/

Mesozoic fleas

Published on March 12, 2012 by zooks777Leave a comment

Giant_fleas1 — Giant Mesozoic fleas from China, 1.4 and 0.8 cm long. From Huang *et al*. (2012)

Strange as it might seem, rather than bringing to mind the opening pages of Michael Crichton’s Jurassic Park ancient fleas suggest to me Frederick Engels’s Dialectics of Nature (1883). In his lampoon of determinism, which might today be directed at a famous evolutionary biologist, Engels wrote:

‘…last night I was bitten by a flea at four o’clock in the morning, and not at three or five o’clock, and on the right shoulder and not on the left calf – these are all facts which have been produced by an irrevocable concatenation of cause and effect, by an unshatterable necessity of such a nature indeed that the gaseous sphere, from which the solar system was derived, was already so constituted that these events had to happen thus and not otherwise.’

But a paper about fossil fleas from the time of the dinosaurs was always going to catch the eye (Huang, D. et al. 2012. Diverse transitional giant fleas from the Mesozoic era of China. Nature, v. 483, p. 201-204), and that they come from China does have an element of inevitability that arises from that country’s rich endowment with sites of exceptional preservation. The fleas are not at all like the shiny creatures that are so difficult to trap in the fur of a cat’s ear, and they are big: up to 2 cm long. Two species come from Middle Jurassic and one from the Lower Cretaceous. The fascinating thing about fleas, however, is that they evolved to live and thrive in fur and feathers. This niche is signified by their claws, whose form and articulation avoid entanglement with fibres: which is why cat fleas are so nimble. While cat fleas are flattened laterally to help them slip though fur and have powerful legs that allows them to leap from host to host, the Mesozoic fleas are flat from back to front and are not so leggy.

English: This photo was taken by Andy Brookes ... — Cat flea ~1.5 mm long. Image via Wikipedia

Being so large, it seems unlikely that these Mesozoic fleas would have parasitized mammals that were probably far smaller on average than now. But by the Jurassic fossil evidence, largely from China, shows that dinosaurs had developed feather-like cover. Their evolution itself created a niche occupied thereafter by fleas and other bloodsuckers. They are wingless relatives of flies (Order: Diptera) that first appear in the Triassic fossil record, both thought to have stemmed from more primitive scorpionflies (Order: Mecoptera)

When Flea-Rex was pain in the neck for T-Rex – South China Morning Post (subscription) (topics.scmp.com)
Giant Jurassic fleas sucked but couldn’t jump (blogs.discovermagazine.com)

Late Devonian: mass extinction or mass invasion?

Published on January 25, 2012 by zooks7775 Comments

The later part of the Devonian (the Frasnian and Famennian Stages) once marked the second largest marine mass extinction (~375 Ma) of the Phanerozoic Eon: it was one of the ‘Big Five’. For the last decade the drop in marine biodiversity in that interval has come under scrutiny: partly because it may have involved several events; no well-supported extinction mechanism has emerged; and extinctions seem have been concentrated on three animal groups – trilobites, brachiopods and reef corals. Something large did happen, as reef-building corals almost disappeared and coral reefs only returned with the rise of modern (scleractinian) corals in the Mesozoic. While the end of the Devonian still figures widely as having experienced a mass extinction event, more detailed palaeontological work at the genus and species level suggests another possibility.

‘Officially’ a mass extinction event must exceed the background extinction rate throughout the Phanerozoic and be above that in immediately preceding and following stages: statistically significant, that is. They always give rise to a marked reduction in biodiversity, but another mechanism can do that without extinctions suddenly increasing. The rate at which new species emerge can fall below that of species extinctions, when the overall number of living species falls. As far as ecosystems are concerned both processes are equally severe, but the causes may be very different.

Hederelloids encrusting a Spiriferida brachiop... — Brachiopod from the Devonian of Ohio, USA. Image via Wikipedia

Reviewing detailed records of Devonian species of two genera of brachiopods and one bivalve genus (50 species in all) in five North American stratigraphic sequences, Alycia Stigall of Ohio University, USA noted apparently significant variations in the local assemblages (Stigall, A. L. 2012. Speciation collapse and invasive species dynamics during the Late Devonian ‘Mass Extinction’. GSA Today, v. 22(1), p. 4-9). Speciation overall fell in the Frasnian and the preceding Givetian, while rate of extinction barely changed. For the three studied genera ,speciation reached low values in the Frasnian and Famennian, but that was accompanied by an equally large fall in extinctions. In this narrow sample we seem to be seeing not an extinction crisis but one of biodiversity. Why?

The Late Devonian saw repeated ups and downs in sea level, which repeatedly connected and disconnected shallow- to moderate-depth marine basins. The fossil record shows repeated cases of species from one basin colonising another, each invasion accompanying rapid marine transgression.. One means whereby species arise is through prolonged isolation of separate populations of the ancestral species through independent genetic drift and mutation. The episodic connection of basins may have prevented such allopatric speciation. Interestingly, the invading species were dominantly animals with a broad tolerance for environmental conditions.

Whether this mechanism applied to all three main animal groups whose diversity plummeted in Late Devonian times remains to be seen, and it begs the question ‘why didn’t it happen among other animal groups that were less affected by whatever the events were?’ One of the problems associated with decreasing biodiversity in modern marine (and terrestrial) settings is growth in the numbers of invasive species, so the work on 375 Ma fossils might help understand and mitigate current ecological issues. The only difference is that for many of the hyper-successful invader species the means of invasion has been provided by human activities. brachiopod brachioopod

Biodiversity Crisis Is Worse Than Climate Change (InnovationToronto.com)

Excitement over early animals dampened

Published on January 9, 2012 by zooks777Leave a comment

Alga (Volvox sp.) — Volvox cyst. Image via Wikipedia

The Neoproterozoic lagerstätte in the Doushantuo Formation in the south of China was until recently thought to be a source of astonishing information about Earth’s earliest animals (See Ancestral animal? in EPN August 2004) that preceded the appearance of those with hard parts at the start of the Phanerozoic. It contains well-preserved fossils that resemble embryos, algae, acritarchs, and small bilaterians. Dated at between 580 to 600 Ma(See Age range of early fossil treasure trove in EPN February 2005), the Doushantuo directly overlies cap carbonates representing the emergence of Earth’s climate from a Snowball epoch represented by a tillite beneath the carbonate sequence. A detailed examination using synchrotron X-ray tomography of the putative animal embryos does show clear signs of cell doubling or palintomy (Huldtgren, T. et al. 2011. Fossilized nucluei and germination structures identify Ediacaran ‘animal embryos’ as encysting protists. Science. V. 334, p. 1696-1699) but also internal cell features most likely to be nuclei, but which have no counterparts in animal embryos. The organisms which the fossils most resemble are indeed eukaryotes, but of a kind separate from animals known as Holozoa. Yet there are striking resemblances with eukaryotes more distant from animals, such as the modern Volvox, a type of alga (Butterfield, N.J. 2011. Terminal developments in Ediacaran embryology. Science. V. 334, p. 1655-1656), that developed from an ancestor further back in time than the separation of metazoan animals from holozoans.

Dead Fossils Tell the Best Tales (news.sciencemag.org)
Protists, not animals (freethoughtblogs.com)

Life at the battery terminal

Published on August 23, 2011 by zooks777Leave a comment

Having an interior that is dominated by reducing conditions and oxidising surface environments since free oxygen gradually permeated from its initial build up in the atmosphere to the ocean depths, the Earth has been likened to a massive self-charging battery. Electrons flow continually as a consequence of the nature of the linked oxidation-reduction: in terms of electrons, oxidation involves loss while reduction involves gain (the OILRIG mnemonic). Although there are natural electrical currents, most of the electron flow is in the form of reduced compounds rich in electrons that make their way through the flow of fluids from the deep Earth – effectively an anode – towards the surface where the reduced compounds lose electrons to create the equivalent of a cathode. Reduction-oxidation (redox) is therefore a power source. Inorganic reactions, such as the precipitation on the sea floor of sulfides from hydrothermal fluids at ‘black smokers’ dissipate energy. Yet the power has considerable potential for organic life. Some bacteria oxidise hydrogen sulfide carried by hydrothermal fluids and others do the same to upwelling methane. In 1977 a teeming biome of worms, molluscs and higher animals was discovered in a totally dark environment around ocean-floor vents. It soon became clear that it could only subsist on chemical energy of this kind, rather than any form of photosynthesis. The key to some metazoans’ success had to be symbiosis with bacteria that could perform the chemical tricks possible in the cathode region of the Earth’s electron flow. There are several candidate compounds: H₂S, CH₄, NH₄, metal ions and even hydrogen gas.

As hydrothermal fluids cycle ocean water into the basaltic crust and underlying peridotite mantle, they not only hydrate the olivines and pyroxenes that dominate the oceanic lithosphere but trigger other reactions one of whose products is hydrogen. As well as a reaction being eyed by those keen on a cheap source of clean fuel, it generates more energy potential for biological metabolism in the guise of hydrogen than those which form other common compound in the returning fluids. Although the nature of hydrogen’s organic use has been elusive, it has now come to light in a surprising guise (Petersen, J.M. and 14 others 2011. Hydrogen is an energy source for hydrothermal vent symbioses. Nature, v. 476, p. 176-180).

One highly successful animal in ocean-floor hot spring systems is a mussel called Bathymodiolus. Genetic experiments by the German-French-US team revealed that a gene known as hupL is present in the mussels’ gill tissue; a gene found in bacteria that use either carbon monoxide or hydrogen as an electron donor. The hupL gene encodes for enzymes known as hydrogenases that are needed to set off the reaction H₂ = 2H⁺ + 2e^– that provides electrons needed in bacterial metabolism; a sort of living fuel cell. Hydrogen-using bacteria interact symbiotically with the mussels, which would otherwise be unable to live in the pitch black environment. Genomic sequencing of tube worms and shrimps that occur in the vent communities also contain the bacterial hupL gene. Hydrogenase enzymes are proteins with an iron-nickel core, and probably evolved far back in bacterial evolution around metal-rich hot springs. Interesting as the specific detail of hydrogen-based symbiosis is, the general concept of Earth’s redox systems’ having battery-like behaviour is very useful. On land groundwater sometimes comes into contact with sulfide ore bodies that are oxidised to yield hydrogen and sulfate ions ,while the groundwater is reduced: a battery comes into being with a cathode in the aerated groundwater and electrons flow from the unaltered orebody towards it. Such currents are useful in revealing hidden orebodies using the ‘self-potential’ or SP method. Indeed the downward change from oxidising to reducing groundwater, caused by the redox reactions involved in weathering and soil formation also result in weak negative and positive ‘electrodes’ with a sluggish flow of compounds that bacteria can exploit and thereby encourage metazoan life through symbiosis. In doing so, changes in redox conditions affect the inorganic load of the slowly moving groundwater so that reduced metal ions can be precipitated once they rise into the oxidising horizon. The general enrichment of the upper horizons of soils in iron oxides and hydroxides, and metal depletion in lower horizons probably stem from the ‘Earth battery’ produced by an interplay between inorganic and organic redox reactions. Be on the look-out for more on this topic as the quest for hydrogen fuels becomes more urgent. A former colleague, Gordon Stanger, investigating groundwater in the Semail ophiolite of the Oman for his PhD in the 1970s discovered to his surprise that in outcrops of the mantle sequence there were springs from which hydrogen bubbled freely: fortunately he was not a smoker…

Orphan, V.J. & Hoehler, T.M. 2011. Hydrogen for dinner. Nature, v. 476, p. 154-155.
Hydrogen highway in the deep sea (eurekalert.org)

Feathers will fly: Archaeopteryx relegated

Published on July 28, 2011 by zooks777Leave a comment

This year, 2011, is the 150^th anniversary of the first Archaeopteryx specimen being unearthed from the famous Solnhofen limestone lagerstätte. With its feathered, lizard-like tail; two-clawed, stubby wings; a bill-shaped muzzle with teeth but no keratin coating; feet capable of perching and unlike those of small dinosaurs; a ‘wishbone’ and lightweight bones, Archaeopteryx was just the half-and-half missing link in the fossil record so desperately needed to support Darwin’s Origin of Species, published two years beforehand. It has remained controversial ever since, even having been claimed to be a forgery by such luminaries as cosmologist Fred Hoyle in 1985, despite its superbly preserved intricacies and the existence at the time of 6 slightly different specimens from the same source some discovered long after Hoyle’s supposed master craftsman must have died. Creationists soon after the first discovery claimed it was simply a bird created on a Friday together with fish (Genesis 1:20) and must have predated dinosaurs by a day, as they were created on the 6^th Day along with all the ‘cattle and creeping thing and beast of the earth’ (Genesis 1:24-31). That scurrilous sect will certainly leap gleefully on the new discovery of a feathered dinosaur from the ever productive Late Jurassic Tiaojishan Formation in NE China (Xu, X. et al.2011. An Archaeopteryx-like theropod from China and the origin of the Avialae. Nature, v. 475, p. 465-470) because ironically, by itself, it could be said to be a missing link too.

In fact, Xiaotingia zhengi possesses features very like those displayed by Archaeopteryx but convincingly close affinities to deinonychosaurian dinosaurs. The shared features show that neither is a bird (Avialae) and nor are they part of the clade that evolved to birds: they are part of the growing group of feathered dinosaurs that may well have glided or even flown. As Lawrence Witmer of Ohio University has observed (Witmer, L.M. 201. An icon knocked off its perch. Nature, v. 475, p. 458-459), ‘This finding is likely to be met with considerable controversy (if not outright horror)…’. However, Witmer still considers Archaeopteryx to have iconic status, indeed yet more, for its taxonomy and that of its related feathery dinosaurs provides compelling evidence that the origin and evolution of life was a ‘rather messy affair’. Undoubtedly, more feathered creatures hundreds of million years old will be unearthed; it is even possible that further finds will push the beast of Solnhofen back onto its avian perch. Let the celebrations begin!

Added 12 August 2011: Ironically, yesterday the German mint issued a €10 silver coin commemorating the 150th anniversary of the first discovery of Archaeopteryx, artwork of the skeleton with fully fledged arms on the reverse side of the coin compared with the stylised German eagle on the front. This event coincides with the greatest crisis facing the eurozone in its short history, though Germany still retains its ‘triple A’ financial status unlike France and the US. See: http://witmerlab.wordpress.com/2011/01/31/evolution-icon-archaeopteryx-turns-150-this-year-how-are-we-celebrating/

no longer first bird (nature.com)
Archaeopteryx Raises Fears Over Creationists Response (thebibleistheotherside.wordpress.com) A fun read!
Some Bad Reporting about Archaeopteryx (theness.com)

From small beginnings

Published on July 15, 2011 by zooks777Leave a comment

The great vegetarian sauropod dinosaurs, such as Brachiosaurus, were the biggest animals to walk the Earth, weighing up to 100 tonnes, as long as 60 m from snout to the end of their tails and more than 10 m tall. So big, indeed, that even the largest contemporary predators would have been unable to get sufficient purchase with their jaws to do them much damage. This vast bulk, unlike even bigger modern whales, was unsupported by water and would have posed major problems had the sauropods not evolved very porous, low-density neck and tail bones and kept their heads small relative to the rest of their bodies. Such small heads needed to take in up to a tonne of vegetation each day to keep the monsters alive and ambling. Their teeth are not those of a chewer, being peg- or spoon-like and pointed forwards; specialised for raking in leaves and twigs, swallowed unchewed in great gulps. Once that style of eating developed in their precursors, with no need for massive chewing muscles it became possible to evolve necks up to 15 m long with increasingly diminutive heads. Studies of large numbers of some species of sauropod precursors indicate that juveniles grew astonishingly quickly, essential if their initial vulnerability was to be outpaced; newly hatched they would have weighed little more than 10 kg. At the growth rates of modern reptiles, the largest sauropods would only have reached full size in about a century. The estimated growth rates suggest warm bloodedness, research suggesting that they maintained body temperatures up to 12°C higher than do alligators. Clearly, sauropod dinosaurs were highly specialised, and their evolution is now known to have been lengthy.

A major news feature in Nature (Heeren, F. 201. Rise of the titans. Nature, v. 475, p. 159-161) traces that evolution through several surprising stages. The earliest likely ancestors, which appear in the Late Triassic (~230 Ma), were about the size of a turkey and had teeth adapted for shredding fibrous plant material; other early dinosaurs show clear signs of a predatory lifestyle. There is a limit to the size of predators bound up with the energy balance between flesh consumption and the energy expended in casing down prey and killing them. The limits on the size of plant eaters are mechanical: how much they can stuff in and the strength of their bodies, especially legs. In a world dominated in numbers by predatory dinosaurs, the selection pressure for herbivores to outgrow them and become too big to bite would have been substantial.

Little Triassic Panphagia (‘eater of everything’) was also bipedal, but the fossil record of sauropod precursors clearly shows their growth to the order of 10 m by the Early Jurassic, but not yet a four-legged gait though they had evolved relatively short but sturdy legs, signs of mass-saving porous neck and tail bones, and jaws with a large gape suited to gulping rather than chewing. By the mid-Jurassic Period sauropods were big, strong and four-legged, and by the Cretaceous they reached unmatched dimensions with the titanosaurs. This evolutionary path was not the only one adopted for dinosaurian herbivory. The famous Iguanodon discovered in 1822 by Gideon Mantell in the Early Cretaceous of Sussex was a member of a bipedal group of herbivores, including the duck-billed dinosaurs, that spanned more or less the same time range as sauropods. Fredric Heeren’s article is accompanied by an on-line ‘tour’ of sauropod evolution (go.nature.com/c7zlct), while the American Museum of Natural History has a website for a major exhibition of sauropods (www.amnh.org/exhibitions/wld/ and http://www.youtube.com/AMNHorg ) that includes footage of a full-scale animatronic Mamenchisaurus from China which breathes and moves, (Switek, B. 2011. Living it large: review of The World’s Largest Dinosaurs exhibition. Nature, v. 475, p. 172).

Necks for sex? No thank you, we’re sauropod dinosaurs [Tetrapod Zoology] (scienceblogs.com)
New Dino Finding: Warm-Blooded, Nimble Beasts (livescience.com)

Earliest animals from continental environments

Published on July 5, 2011 by zooks777Leave a comment

Skolithos trace fossil. Scale bar is 10 mm. — Skolithus burrows. Image via Wikipedia

Following closely on discovery in 1 Ga old sediments of the earliest evidence for eukaryote life in continental environments (see Eukaryote conquest of the continents posted June 11, 2011) it seems that metazoan animals colonised non-marine environments earlier than had previously been thought. Up to now most palaeontologists believed that there was a lag of at least 80 Ma between the emergence of marine bilaterian metazoans and their expansion into freshwater, due to a number of physiological hurdles that had to be overcome, such as regulation of trace element chemistry within their cells and bodily fluids. It has been know for more than a century that the first signs of sturdy animals in the marine realm are burrows in tidal sediments that formed more or less at the Cambrian-Precambrian boundary; the earlier sac-like Ediacaran fauna seemed ill-suited to a burrowing or infaunal habitat. A considerable thickness of clastic sediments occur in the Cambrian of eastern California, USA. The earliest are clearly shallow-marine and contain abundant evidence of burrowing. Succeeding them are intensively studied fluviatile sands and silts that have been used a model for sedimentation in the absence of the stabilising influence of land plants. What has been overlooked until recently is evidence for colonisation of the river-laid deposits by burrowing animals (Kennedy, M.J. & Droser, M.L. 2011. Early Cambrian metazoans in fluvial environments, evidence of the non-marine Cambrian radiation. Geology, v. 39, p. 583-586).

The burrows include the vertical U-shaped forms given the name Arenicolites, which is the most common trace fossil, simple vertical tubes (Skolithus) and horizontal, meandering tubes with furrowed sides (Psammichnites). Anyone who has seen the Early Cambrian Pipe Rock of NW Scotland will also have seen these trace fossils, yet the Pipe Rock shows evidence of tidal deposition and is shallow marine. Their non-marine equivalents in California are coeval with the earliest known trilobites in the Cambrian marine sequence. It seems that whatever the burrowing animals were, they easily overcame any physiological or environmental barriers to adopting a life in freshwater, encouraged by the ready sustenance that terrestrially adapted acritarchs and cyanobacteria had provided for half a billion years previously.

Eukaryote conquest of the continents (earth-pages.co.uk)
Come On In, the Water’s Fresh (news.sciencemag.org)

Eukaryote conquest of the continents

Published on June 11, 2011 by zooks777Leave a comment

Geologists often assume that the continents were first colonised by plants, insects then vertebrates beginning in the Ordovician Period with preservation of spores very like those of the liverworts, which incidentally can only be removed from gravel driveways by the use of acetic acid, glyphosate, pycloram and flamethrowers having no lasting effect. The most intractable of all organisms found on the land surface today are prokaryotic (nucleus-free cells) cyanobacteria whose biofilms cement desert varnish (see Desert varnish, May 2008 in Subjects: GIS and Remote Sensing). Cyanobacteria have long been suspected to have been the first life forms to adopt a terrestrial habit, and their cells have been discovered in the now-famous Neoproterozoic lagerstätten in the Doushantuo Formation of China (see The earliest lichens, May 2005 in Subjects: Geobiology, palaeontology, and evolution) The oldest un-metamorphosed sediments in Britain, the Torridonian redbeds that form the magnificent scenery of north-western Scotland, now push back the date of the earliest eukaryotic (cells with nuclei) terrestrial life, of which we are one form, half a billion years before the Doushanto cyanobacteria (Strother, P.K. et al. 2011. Earth’s earliest non-marine eukaryotes. Nature, v. 473, p. 505-509). The Torridonian is one of the thickest (~12 km) terrestrial sequences on the planet, and spans a time range of around 200 Ma (1.2 to 1 Ga). It is a repository of almost the entire range of humid continental sedimentary environments: colluvial fan; bajada; alluvial; deltaic and lacustrine build-ups. Grey lake-bed mudstones and phosphate nodules in the Torridonian yield small organic fossils lumped in the sack-term acritarchs. Similar bodies, whose affinities are diverse and generally obscure, have been reported from marine sediments as old as 3.2 Ga. The fascination of those from the Torridonian, other than their terrestrial association, is that some include aggregates of spherical cells with tantalising suggestions of central nuclei and, as a whole assemblage, exhibit a range of morphologies far beyond that of nucleus-free prokaryotes and the signature of cytoskeletal filaments that form a ‘scaffold’ for eukaryote cells. Worth noting is that one of the authors is Martin Brasier of Oxford University, whose meticulous bio-morphological skills in microscopy has made him one of the foremost critics of speculation on Precambrian microfossils (see Doubt cast on earliest bacterial fossils April 2003 in Subjects: Geobiology, palaeontology, and evolution). The authors opine that the ecological diversity of freshwater and land systems, and the physico-chemical stress associated with repeated wetting and desiccation compared with the marine domain may have been instrumental in origination of the Eucarya, which should give the Torridonian a scientific reputation that extends beyond these shores.

Complex Life Emerged from Sea Earlier Than Thought (livescience.com)

Wide-eyed dinosaurs

Published on June 11, 2011 by zooks777Leave a comment

Dinosaur Exhibition Beijing — Image by Ivan Walsh via Flickr

One of the surprises concerning the dinosaurs was that some species were able to live at near-polar latitudes. The surprise is not about their ability to survive a cold climate for the Cretaceous world was one characterised by greenhouse conditions and ice-free polar regions swathed in forests. On top of that, evidence is accumulating that some dinosaurs at least were able to regulate their body temperature; they may have been warm-blooded. The oddity is that they were able to survive the winter darkness of latitudes above those of the Arctic and Antarctic Circles. It now seems that some groups of dinosaurs evolved excellent night-time vision (Schmitz, L. & Motani, R. 2011. Nocturnality in dinosaurs inferred from scleral ring and orbit morphology. Science, v. 332, p. 705-708). Not only did some have large eyes, but preservation of the fibrous outer ring of the eye or sclera – the ‘whites’ in our case – in some large-eyed dinosaurs shows a reduction in width that is characteristic of good scotopic or night vision. Since much of the polar ‘night’ is more like twilight than perpetually full darkness, enhanced night vision would have allowed high-latitude dinosaurs to survive winter by crepuscular feeding habits. This more or less extinguishes the notional day-night duality of terrestrial vertebrate life during the Mesozoic; dinosaurs by day and early mammals by night that allowed mammalian ancestors to escape the clutches of dinosaur predators. Indeed many Mesozoic mammals show signs of diurnality.

Jurassic Dark: Study Suggests Dinosaurs Hunted at Night (history.com)

Some megafaunas of the recent past

Published on May 7, 2011 by zooks7771 Comment

Harvey was an imaginary, 2 m tall rabbit which befriended Elwood P. Dowd in Mary Chase’s 1944 comedy of errors named after the said rabbit, filmed in 1950 and starring James Stewart as the affable though deranged Dowd. Though not so tall, a giant fossil rabbit (relative to modern rabbits) weighing it at 12 kg has emerged from the prolific Late Neogene cave deposits of Minorca (Quintana, J. Et al. 2011. Nuralagus rex, gen. et sp. nov., an endemic insular giant rabbit from the Neogene of Minorca (Balearic Islands, Spain). Journal of Vertebrate Paleontology, v. 31, p. 231-240). At about 3 times heavier than Barrington my lagomorphophagic (rabbit-eating to the uninitiated) cat, this would have been, to him, a beast best avoided, as the name N. rex might suggest. So unexpected was a gigantic rabbit that, interestingly, it was first mistaken for a fossil tortoise, albeit one lacking a carapace.

Island faunas have long been recognized as havens for peculiar trends in evolutionary successions, either towards dwarfism as in the case of the tiny elephants on which H. floresiensis preyed until quite recently on the Indonesian island of Flores or gigantism as in this remarkable case. As the authors infer, on account of the creature’s ‘…(short manus and pes with splayed phalanges, short and stiff vertebral column with reduced extension/flexion capabilities), and the relatively small size of sense-related areas of the skull (tympanic bullae, orbits, braincase, and choanae)…’ this was a rabbit which sadly could not hop. This un-rabbit-like locomotion may well have been a result of it not having needed to hop, being so large as to challenge seriously the largest Neogene predators on the island – lizards – and thereby saving energy. For much the same evolutionary logic, neither did N. rex have long ears, having less need to detect a stealthy nemesis.

The demise of Late Neogene megafaunas in general has often been ascribed to human intervention. Though N. rex became extinct at around 3 Ma and avoided human predation, later giants did not fare so well. A case in point is the celebrated wooly mammoth, the last of the steppe mammoths, that first appeared in the fossil record of Siberia around 750 ka ago (Nicholls H. 2011. Last days of the mammoth. New Scientist, v. 209 (26 March 2011), p. 54-57). DNA evidence from hairs preserved in permafrost suggests that ancestors of the steppe mammoth line diverged with that of Asian elephants from African elephant ancestors around 5 Ma. Interestingly, ancestral steppe mammoths – without shaggy coats but having the archetypical curved tusks – roamed Africa until 3 Ma when they disappear to reappear in Europe and Asia, yet without adaptation to cold until the onset of northern glaciations around 2.5 Ma. At that point the true steppe mammoths evolved increased tooth enamel needed for a diet of mainly silica-rich grasses to resist wear. The family spread to North America when sea-level fell to expose the sea floor of the Bering Straits. The woolly mammoth is the star partly because specimens periodically turn up almost perfectly preserved in permafrost. This has allowed almost half of a full DNA sequence to be restored. Preserved haemoglobin from a woolly mammoth shares with that from modern musk oxen an ability to release oxygen at temperatures well below zero so that they could function even if their extremities became chilled.

Astonishingly, all elephants urinate so copiously that they soak their range lands in DNA, though it only lingers in ultra cold climes. This bizarre fact encouraged a large team of palaeobiologists to comb frozen soils in an alluvium section in Arctic Alaska for mammoth DNA (Haile, J and 17 others, 2009. Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proceedings of the National Academy of Sciences of the USA, v. 106, p. 22352–22357). Mammoth DNA turned up in soils as young as 10.5 ka. Moreover mammoth overlapped with human occupation for several millennia, casting doubt on theories that mammoth extinction resulted either from human predation or the introduction of epidemic disease that might have felled mammoths quickly: they declined gradually. Yet the empirical fact that steppe mammoths in general and the woolly mammoth in particular survived through at least 8 major glacial-interglacial transitions only to become extinct at the start of the current Holocene interglacial period at the same time as humans recolonised the frigid desert of Arctic latitudes, where woolly mammoths could survive except at the last glacial maximum surely points to some influence that arose from human activity.

Mammoth discovery as builders unearth first rare skull and tusks of ancient beast’s relative the mastodon (dailymail.co.uk)

Antarctic analogue for alien life?

Published on May 5, 2011 by zooks777Leave a comment

The full ‘Snowball Earth’ model for episodes in the Neoproterozoic that left glaciogenic sediments at near-equatorial palaeolatitudes implies that the oceans were frozen over globally. An objection to that is the likelihood that all photosynthetic activity would have been shut down leading to near catastrophe for all life forms of the time except those based on chemoautotrophic metabolism, as around hydrothermal vents. Antarctica has around 140 lakes that have been frozen over for at least hundreds of thousands if not millions of years, the best known being Lake Vostok, deep within the continent, that Russian scientists are on the verge of tapping after drilling through more than 3 km of glacial ice. Who knows what they might find? Far less extreme, but also having perennial ice cover, is Lake Untersee close to the coast in East Antarctica. Its summer ice cover is 3 m thick and it is presumed to have remained icebound through previous interglacials, although it is fed by meltwater from a nearby glacier in summer. It is not filled with fresh water, however, having a pH up to 12.1, around that of household bleach. It also has very high oxygen content, in fact supersaturated at 50% more than the solubility expected at 0°C. Lake Untersee would be expected to have little life, being an extremely hostile environment. Nonetheless, it does boast a biome and sufficient light gets through the ice cover to support microbial mats of photosynthesising blue-green bacteria (Andersen, D.T. et al. 2011. Discovery of large conical stromatolites in Lake Untersee, Antarctica. Geobiology, v. 9, p. 280–293). As well as perhaps helping elevate the oxygen levels in the lake water, these organisms have secreted stromatolite-like cones, pinnacles and mounds, but not ones made of carbonate. Although the water contains plenty of calcium ions, there is insufficient carbon as CO₃ or HCO₃ ions for calcite to be precipitated. The carbon-poor nature of the water seems to confirm its long-term isolation from the atmosphere. Instead, the stromatolites are made of laminated clay, maybe derived by exceedingly slow breakdown of feldspars that would also yield calcium and hydroxyl ions to explain the waters peculiar chemistry. The different shapes of stromatolites are linked to different cyanobacterial communities, which may help explain morphological variations among fossil stromatolites.

Stromatolites in Lake Untersee, East Antarctica. Image Dale Andersen,

Carl Sagan Center for the Study of Life in the Universe

The lead author is from the SETI Institute in California, and presumably visited Lake Untersee in the cause of exobiology, as reported in other commentaries on the paper. However, the peculiarities of the lake and its life seem to be just that, with little relevance to frigid sedimentation in the distant past apart from a possible explanation for varying shapes of fossil stromatolites. Nor is the lake sterilised by virtue of perennial ice cover. Being fed by glacial melting it has received rock flour that has broken down to clays, and that implies meltwater carries other materials from the ice cap. Even Antarctica is not isolated from wind-blown dust, so cyanobacteria may have been introduced by sturdy, wind-borne spores being incorporated in the ice cap, eventually to end up in Lake Untersee. It seems that the lead author actually dived in the lake, which puts the fears of contamination by careful drilling into Lake Vostok into perspective. How such an environment links to notions of life elsewhere in the universe is hard to see. The truly fascinating thing about home-grown cyanobacteria is that early variants may well have cuddled up with other simple cells for mutual wellbeing to become the chloroplasts of eucaryan photosynthesising autotrophs, on which most metazoan life on Earth now depends.

Visit: http://www.astrobiology.com/news/viewnews.html?id=1515

Antarctic Microbes Live Life to the Extreme (scientificamerican.com)
Antarctic Lake Hides Bizarre Ecosystem (wired.com)

Bigging-up the Ediacaran

Published on March 2, 2011 by zooks777Leave a comment

The biota dominated by large, indistinct and generally flabby creatures named together with the eponymous Period (635-542 Ma) from their type occurrence in late Neoproterozoic sediments of the Ediacara Hills of South Australia is made up of imprints of a strange bunch of organisms – bags; discs; donut-shapes and the enigmatic quilted organisms that likely subsisted by osmotically drawing nutrients from ocean water through their skins – together with others that have forms suggestive of extant groups – cnidarians; bilaterian embryos; mollusc-like and segmented forms. The Avalon fauna of Newfoundland, discovered after those of Charnwood Forest, UK and the Ediacara Hills, added other life forms, including the fractal-like rangeomorphs from earlier (~579 Ma) times in the Ediacaran. Recently, the oldest known (630-551 Ma) members of the Ediacaran biota were presented (Yuan, X. et al. 2011. An early Ediacaran assemblage of macroscopic and morphologically differentiated eukaryotes. Nature, v. 470 , p. 390-393). Unlike the better known organisms that were preserved against all odds in quite coarse sand- and siltstones, the host rocks in South China are a more familiar lagerstätten of black shales in which fossils take the form of carbonaceous films. These preserve considerable detail and are unlike the later Ediacaran organisms. Many resemble marine algae (seaweeds), some very like kelp, in their living positions and probably represent quite sunlit seabed habitats(the authors also suggest that some rare forms may be bilaterian worms and cnidarians). Dating of this Lantian assemblage stems from several ash beds and correlation of C-isotope anomalies with other Ediacaran sections.

From their age, the Lantian fossils are of organisms that evolved shortly after the Marinoan (635 Ma) ‘Snowball Earth’ episode, whereas the faunas of Newfoundland and Australia followed the less prominent Gaskiers glacial epoch (582 Ma). So they represent another evolutionary surge presaged by global ice cover and massive stress for all terrestrial life. If the Lantian organisms were algae, then photosynthesising eukaryotes may have been the first large multicelled organisms. All eukaryotes – autotrophs and heterotrophs – are obliged to live in oxygenated conditions, so at least shallow water after the Marinoan glacial event must have been such, although preservation of the Lantian fossils does indicate anoxic conditions during burial. The association of evolutionary bursts with two ‘Snowball Earth’ periods ought to point palaeobiologists to the sedimentary sequences that followed the earliest such event, the Sturtian (~720 Ma), which shows similar violent swings in C-isotopes that indicate surges and declines in burial of organic matter. So far only sponge-like fossils have been found from the Cryogenian Period of the Neoproterozoic that encompasses the Sturtian and Marinoan glacial episodes (Maloof, C. & 8 others 2010. Possible animal-body fossils in pre-Marinoan limestones from South Australia. Nature Geoscience, v. 3, p. 653-659).

Oldest fossils of large seaweeds, possible animals tell story about oxygen in an ancient ocean (eurekalert.org)
Narbonne, G.M. 2011. When life got big. Nature, v. 470, p. 339-340

Feeding habits of ammonites

Published on March 1, 2011 by zooks777Leave a comment

Emerging in the Upper Palaeozoic and rapidly diversifying through the Mesozoic, thereby surviving over a period of 340 Ma, ammonites proved to be a stratigrapher’s dream organism as well as being the most widely collected fossils. As well as their rapid evolution of form, they were able to spread widely though the oceans in larval form, through the jet propulsion they shared with other cephalopods and because they floated when dead and drifted with currents. Much of ammonite taxonomy has centred for almost two centuries on their external for: ribs, keels, knobbles, intricacy of the sutures separating each body chamber and the previous one and whether or not their growing shell coils hid earlier parts or developed into an open spiral. These characteristics enables such a wealth of easily recognised genera and species that as zone fossils ammonites have been used to finely divide Mesozoic sediments; Jurassic ammonites locally divide the Jurassic (199 – 145 Ma) into time slices each of which represent a few hundred thousand years.

What is least familiar to non-specialists is the feeding apparatus of ammonites and what they actually ate. Thanks to the use of high energy X-ray images it turns out that, unlike squid, octopuses and the similar looking modern Nautilus, some Cretaceous ammonites would not have been able to rip apart large prey (Kruta, I et al. 2011. The role of ammonites in the Mesozoic marine food web revealed by jaw preservation. Science, v. 331, p. 70-72). Instead of a large beak-like process the ammonites studied sported a rasp-like radula, similar to that used on lettuce by the slug. The radula is armed with tiny but quite fearsome looking barbs, suitable for grating but not gnawing. The analysed ammonites may probably have eaten plankton. Indeed, one specimen turned out to have fragments of its last meal lodged in its radula; an isopod and a small gastropod. That diet tallies with the likely habitat of some ammonites; they were probably able to change their buoyancy by manipulating the gas and water content of their abandoned earlier body chambers to move up and down in the upper ocean. However, such was the stratigraphic duration, global spread and diversification of the ammonites, further studies of this kind would be needed to verify general plankton feeding. However, such a diet may well explain the conundrum of the total extinction of ammonites at the end of the Cretaceous while the superficially similar nautiloids survived and live today. The Cretaceous-Palaeocene (K-P formerly K-T) mass extinction devastated plankton, while larger marine organisms lived on to serve as nautiloids prey.

Ammonites’ last meal: New light on past marine food chains (eurekalert.org)

Linking oxygen levels to great animal radiations

Published on January 6, 2011 by zooks777Leave a comment

Dunkleosteus (10 m long) of the Late Devonian. Image by Travis S. via Flickr

Probably the greatest ecological truism is that without oxygen there would be no life forms on Earth above the level of a restricted number of prokaryotes. Since around 2.4 Ga, when free atmospheric oxygen first appeared, levels have risen to the present 21% – it was probably as high as ~30% in the Carboniferous and Cretaceous Periods. Charting the rise has been difficult and the history of oxygen is written with a very broad brush. If there had been sudden increases in the availability of oxygen in the atmosphere and oceans there ought to have been a bursts of evolutionary radiation and diversity, but often oxygen-related causality for events such as the Cambrian Explosion have been speculative, as have cases for the inverse, declines due to downturns in oxygen levels (see Oxygen depletion before P-T extinction in the November 2003 issue of EPN). Recently a proxy for the redox chemistry of the global ocean, and therefore for relative changes in atmospheric oxygen, has been developed. It is based on the abundance and isotopic composition of the element molybdenum (Mo) in sedimentary rocks: higher ⁹⁸Mo relative to ⁹⁵Mo (the d⁹⁸Mo value) signifies higher oxygen levels. Its recent use in relation to evolutionary radiations (Dahl, T.W. et al. 2010. Devonian rise in atmospheric oxygen correlated to the radiations of terrestrial plants and large predatory fish. Proceedings of the National Academy of the US, v. 107, p. 17911-17915) has produced interesting results. The US-Swedish-Danish-British team analysed the Mo in euxinic (reduced) marine black shales, which concentrate the element from seawater, in the Proterozoic and Phanerozoic Eons. Increases in δ⁹⁸Mo occur at the time of the Cambrian Explosion, as expected, and also during the Devonian. The latter correlates with increasing diversification of large fishes and among early terrestrial plants, and may have been the greatest leap in the bioavailability of oxygen in Earth’s history, stemming from the ‘greening’ of the land. So far Mo-isotope data have not been obtained from Carboniferous, Permian or Cretaceous back shales, but the ratio of Mo to organic carbon content in black shales of those ages – a less constrained proxy – does confirm what has been suspected: highs (greater than present levels) in the Carboniferous and Cretaceous and lows during the Permian and Triassic. However, any hopes that the approach can be calibrated to actual oxygen levels seem likely to be optimistic as the controls over dissolved molybdenum supply to the oceans and its transfer to sediments are extremely complex.

Added 14 January 2011. Some of the team feature in a related article (Gill, B.C. et al. 2011. Geochemical evidence for widespread euxinia in the Later Cambrian ocean. Nature, v. 469, p. 80-83) that ticks all the geochemical boxes for the evolutionary effects of depleted oxygen; i.e. extinctions. They use new measurements of sulfur isotopes in conjunction with published carbon-isotope and other geochemical data from a wide range of Late Cambrian sediment types and environments in six well-known sections of that age. Spikes in the relative abundance of ³⁴S match those in ¹³C along with a decrease in Mo in one section (see above), suggesting temporary increases in carbon and sulfide burial during periods of oxygen deficiency in the Late Cambrian ocean. Massive sequestration of organic carbon may have led to the extremely cold Late Cambrian climate, as described in A chilly Late Cambrian (this issue). Combined with changes in redox conditions associated with ocean anoxia this would have especially stressed animals, even on continental shelves had oxygen depleted water risen from the depths where sulfur and carbon burial were going on.

See also: Shields-Zhou, G. 2011. Toxic Cambrian oceans. Nature, v. 469, p. 42-43.

Oxygen crash led to Cambrian mass extinction (newscientist.com)

Blood of the dinosaurs

Published on January 6, 2011 by zooks777Leave a comment

Epic battle in my backyard — Image by Cliff Beckwith via Flickr

Though it is highly likely that burial of fossils for millions of years destroys any trace of their DNA the massive bones of large creatures can preserve cell material. A near complete 67 Ma old Tyrannosaurus rex, fondly known as ‘Big Mike’ has revealed blood cells in thin sections of its bone (Schweitzer, M.H. 2010. Blood from stone. Scientific American, v. 303 (November 2010), p. 38-45). Her article also covers traces of blood vessels, and collagen of similar antiquity. The research involved positive reaction of antibodies against proteins, thereby proving the materials to be organic and not products of biomineralisation formed during the process of fossilisation. Potentially such forensic work can tease out relationships among animal groups whose fossils preserve organic materials, in a similar way to indications of the rise of prokaryote groups by biogeochemical marker molecules in carbonaceous shales. Indeed, sequences of fossil proteins from dinosaurs closely resemble that of modern birds. One of the great surprises of the late 20^th century was the growing evidence that the stem-line for birds was dinosaurian, specifically the theropod group. This is nicely summarized by another review article (O’Donoghue, J. 2010. Flight of the living dead. New Scientist, v. 208 (11 December 2010), p. 36-40) that addresses the certainty of birds’ evolution from dinosaurs; which of the fossils is bird, which feathered dinosaur and when did they separate; and why did birds survive the end-Cretaceous mass extinction while dinosaurs famously succumbed – probably a matter of breeding; its pace, that is. The two articles together suggest a fruitful way forward for palaeobiologists.

Further material about biochemical relics in fossils and methods used to detect and analyse them can be found in Hecht, J. 2011. Waking the dead. New Scientist, v. 209 (22 January 2011 issue), p. 43-45.

Correction to marine biodiversity record and mass extinctions

Published on November 4, 2010 by zooks777Leave a comment

The mainstay of geobiologists’ efforts to chart the timing and pace of mass extinctions and diversification since 1997 has been the monumental collation of information in fossil collections undertaken by the late Jack Sepkoski from the 1980s until shortly before his death in 1999. It was his plotting of marine fossil genera numbers against their time ranges that first quantified the ‘Big Five’ and lesser mass extinctions, and the course of re-diversification that followed in their wake. One problem that Sepkoski was unable to account for was the inherent biases in collections: under-representation of earlier genera than younger ones; different representation from different areas partly because developed-world collections are larger than those from the majority world and partly because modern diversity changes with latitude; and varying preservation of less-substantial organisms. Well aware of the shortcomings of his initial compilations, Sepkoski with others set up the Palaeobiology Database (PBDB) that now encompasses almost 100 thousand collections. Sadly, Sepkoski did not live to analyse this record with statistical methods that lessen the influence of bias, but one of his successors has done just that (Alroy, J. The shifting balance of diversity among major marine animal groups. Science, v. 329, p. 1191-1194). Alroy’s approach sets out to represent the rare with a fair weighting relative to common groups of organisms, using a complex multivariate method called ‘shareholder’ sampling, which corrects some of the artefacts in Sepkoski’s work and earlier manipulation of the PBDB.
One important feature is that Alroy’s method does not assume that all groups follow the same ‘rules’ of diversification and adaptive radiation, particularly after mass extinctions. The upshot is a history with ups and downs, but not such a prominent growth in diversity in the late-Mesozoic and Cenozoic Eras as that in Sepkoski’s original compilation, although life did become richer. For someone, like me, who has not followed the developments since Sepkoski’s original work, there is another significant difference. There are 7 or 8 significant falls in diversity rather than 5. The Triassic-Jurassic boundary no longer shows a mass extinction, but the opposite. Major extinctions show up for the mid-Carboniferous, mid- and end-Jurassic and the Oligocene, where none were especially noticeable in the original plots by Sepkoski. Finally diversity peaks in the Siluro-Devonian and the Permian figure as prominently as that of the late-Cretaceous. Clearly, rules are few and one that was almost an assumption, that diversification of marine life after mass extinctions was exponential, is no longer borne out. Whether or not this new approach will bear fruit in refining or redefining the ecological dynamics that shaped and continue to shape life on Earth remains to be seen. It is tempting to be a bit cynical: is it all punctuated chaos (Bennett, K. 2010. The chaos theory of evolution. New Scientist, v. 208 (16 October 2010), p. 28-31)?

Comet impacts’ candidature for origin of life

Published on November 4, 2010 by zooks777Leave a comment

Most researchers concerned with the origin of life acknowledge that some preparatory organic chemicals would have been required, whose origin Darwin ascribed to a ‘warm, little pool’, and Haldane and Oparin to electrical discharges in the early atmosphere; both lines having been followed-up in practice by more recent scholars. A variety of biologically useful chemical ‘building blocks’ have also been recognised in comets, some meteorites – carbonaceous chondrites – and even in interstellar dust clouds. So one school looks to their supply from outside the Earth system. One possibility has had more scanty attention – the effects of impacts, as the power involved seems overwhelming for the survival of delicate organic molecules. Nir Goldman and his colleagues at the Lawrence Livermore National Laboratory in California have had a second look at this unlikely scenario (Goldman, N. et al. 2010. Synthesis of glycine-containing complexes in impacts of comets on early Earth. Nature Chemistry, v. 2, p. 949–954). Their approach has been to examine the implications of impact shock at likely collision speeds followed by post-shock expansion on mixtures of water, ammonia, carbon monoxide and dioxide, and methanol that are almost guaranteed in the make-up of most cometary ices. Their modelling suggests that carbon-nitrogen bonds form under shock conditions in long chain compounds. In the aftermath of huge collision shock the impact products undergo rapid expansion and cooling during which the chains can break down to simpler molecules, including some akin to amino acids such as glycene. The bombardment of Earth in the Hadean Eon (4.5-3.8 Ga) involved huge masses of material, almost certainly some delivered by icy comets that would have greatly increased the amount of water and the number of CHON compounds in the early Earth’s outer parts.

Correction to marine biodiversity record and mass extinctions

Published on November 1, 2010 by zooks777Leave a comment

One important feature is that Alroy’s method does not assume that all groups follow the same ‘rules’ of diversification and adaptive radiation, particularly after mass extinctions. The upshot is a history with ups and downs, but not such a prominent growth in diversity in the late-Mesozoic and Cenozoic Eras as that in Sepkoski’s original compilation, although life did become richer. For someone, like me, who has not followed the developments since Sepkoski’s original work, there is another significant difference. There are 7 or 8 significant falls in diversity rather than 5. The Triassic-Jurassic boundary no longer shows a mass extinction, but the opposite. Major extinctions show up for the mid-Carboniferous, mid- and end-Jurassic and the Oligocene, where none were noticeable in the original plots by Sepkoski. Finally diversity peaks in the Siluro-Devonian and the Permian figure as prominently as that of the late-Cretaceous. Clearly, rules are few and one that was almost an assumption, that diversification of marine life after mass extinctions was exponential, is no longer borne out. Whether or not this new approach will bear fruit in refining or redefining the ecological dynamics that shaped and continue to shape life on Earth remains to be seen. It is tempting to be a bit cynical: is it all punctuated chaos?

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Comet impacts’ candidature for origin of life

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