Tag: RNA

Asteroid Bennu: a ‘lucky dip’ for NASA and planetary science

Published on by zooks777Leave a comment

I must have been about ten years old when I last saw a ‘lucky dip’ or ‘bran tub’ at a Christmas fair.  You paid two shillings (now £0.1) to rootle around in the bran for 30 seconds and grab the first sizeable wrapped object that came to hand:. In my case that would be a cheap toy or trinket, but you never knew your luck as regards the top prize. There is a small asteroid called 101955 Bennu, about half a kilometre across, whose orbit around the Sun crosses that of the Earth. So it’s a bit scary, being predicted to pass within 750,000 km of Earth in September 2060 and has a 1 in 1,880 chance of colliding with us between 2178 and 2290 CE. Because Earth-crossing asteroids are a cheaper target than those in the Asteroid Belt, in 2016 NASA launched a mission named OSIRIS-REx to intercept Bennu, image it in great detail, snaffle a sample and ultimately return the sample to Earth for analysis. This wasn’t a shot in the dark, as a lot of effort and funds were expended to target and then visit Bennu. But unlike me at the fair ground, NASA will be very happy with the outcome.

The asteroid Bennu, showing its oblate spheroidal shape, due to rotation, and its rubbly structure. Source: NASA/Goddard/University of Arizona via Wikimedia Commons

Bennu is a product of what might be regarded as ‘space sedimentation’, indeed a kind of conglomerate, being made up of boulders up to 58 m across set in gravelly and finer debris or ‘regolith’. High-resolution images revealed veins of carbonate minerals in the boulders. They suggest hydrothermal activity in a much larger parent body – one of many proto-planets accreted from interstellar gas and dust as the Solar System first began to form over 4.5 billion years ago. Its collision with another sizeable body knocked off debris to send a particulate cloud towards the Sun, subsequently to clump together as Bennu by mutual gravitational attraction. The carbonate veins can only have formed by circulation of water inside Benno’s  parent.

The ‘REx’ in the mission’s name is an acronym for ‘Regolith Explorer’. Sampling was accomplished on 20 October 2020 by a soft landing that drove a sample into a capsule, and then OSIRIS-REx ‘pogo-sticked’ off with the booty. The capsule was dropped off by parachute after the mission’s return on 24 September 2023, in the manner of an Amazon delivery by drone to a happy customer. So, you can understand my ‘lucky dip’ metaphor. And NASA certainly was ‘lucky’ as the contents turned out to be astonishing, as related two years later by the analytical team in the US, led by NASA’s Angel Mojarro (Mojarro, A. et al. 2025.Prebiotic organic compounds in samples of asteroid Bennu indicate heterogeneous aqueous alteration. Proceedings of the National Academy of Science, v. 122, article e2512461122; DOI: 10.1073/pnas.2512461122).

The rock itself is made from bits of carbonaceous chondrite, the most primitive matter orbiting the Sun. It contains fifteen amino acids, including all five nucleobases that make up RNA and DNA – adenine (A), guanine (G), cytosine (C), thymine (T) and uracil (U) – as in AUGC and AGCT. Benno’s complement of amino acids included 14 of the 20 used by life on Earth to synthesise proteins. The fifteenth, tryptophan, has never confidently been seen in extraterrestrial material before. Alkylated polycyclic aromatic hydrocarbons, also found in Bennu, are seen in abundance in interstellar gas clouds and comets by detecting their characteristic fluorescence when illuminated by mid-infrared radiation from hot stars using data from the Spitzer and James Webb Space Telescopes. These prebiotic organic compounds have been suggested to have played a role in the origin of life, but exposure to many produced by human activities are implicated in many cancers and cardiovascular issues.  A second paper by Japanese biochemists and colleagues from the US was also published in early December 2025 (Furukawa, Y. and 13 others 2025. Bio-essential sugars in samples from asteroid Bennu. Nature Geoscience, v. 12, online article; DOI: 10.1038/s41561-025-01838). The authors identified several kinds of sugars in a sample from Bennu, including ribose – essential for building RNA – and glucose. Bennu also contains formaldehyde – a precursor of sugars – perhaps originally in the same brines in which the amino acids formed.

Yet another publication coinciding with the aforementioned two focuses on products of the oldest event in the formation of Bennu: its content of pre-solar grains (Nguyen, A.N. et al. 2025. Abundant supernova dust and heterogeneous aqueous alteration revealed by stardust in two lithologies of asteroid Bennu. Nature Astronomy, v. 9, p. 1812-1820; DOI: 10.1038/s41550-025-02688-3).  In 1969 a 2 tonne carbonaceous chondrite fell near Allende in Mexico. The largest of this class ever found, it contained tiny, pale inclusions that eight years of research revealed to represent materials completely alien to the Solar System. They are characterised by proportions of isotopes of many elements that are very different from those in terrestrial materials. The anomalies could only have formed by decay of extremely short-lived isotopes that highly energetic cosmic rays produce in a manner analogous to neutron bombardment: they are products of nuclear transmutation. It is possible to estimate when the parent isotopes produced the anomalous ‘daughter’ products. One study found ages ranging from 4.6 to 7.5 Ga: up to three billion years before the Solar System began to form. It is likely that the grains are literally ‘star dust’ formed during supernovae in nearby parts of the Milky Way galaxy. Bennu samples contain six-times more presolar grains than any other chondritic meteorites. Nguyen et al. geochemically teased out grains with different nucleosynthetic origins. These ancient relics point to Bennu’s formation in a region of the presolar cloud that preceded the protoplanetary disk and was a mix of products from several stellar settings.

The results from asteroid Bennu support the key idea that that amino acid building blocks for all proteins and the nucleobases of the genetic code, together with other biologically vital compounds arose together in a primitive asteroid.  Its evolution provided the physical conditions, especially the trapping of water, for the interaction of simpler components manufactured in interstellar clouds. Such ‘fertile’ planetesimals and debris from them almost certainly accreted to form planets and endowed them with the potential for life. What astonishes me is that Bennu contains the five nucleobases used in terrestrial genetics and 70% of the amino acids from which all known proteins are assembled by terrestrial life. But, as I try to explain in my book Stepping Stones: The Making of Our Home World, life as we know it arose, survived and evolved through a hugely complex concatenation of physical and chemical events lasting more than 4.5 billion years. The major events and the sequences in which they manifested themselves may indeed have been unique. Earth is a product of luck and so are we!

See also: Tabor, A. et al. 2025. Sugars, ‘Gum,’ Stardust Found in NASA’s Asteroid Bennu Samples. NASA article 2 December 2025. Glavin, D.P. and 61 others 2025. Abundant ammonia and nitrogen-rich soluble organic matter in samples from asteroid (101955) Bennu. Nature Astronomy, v. 9, p. 199-210; DOI: 10.1038/s41550-024-02472-9

Life’s origins: a new variant on Darwin’s “warm little pond”

Published on by zooks777Leave a comment

In 1871 Charles Darwin wrote to his friend Joseph Hooker, a botanist:

“It is often said that all the conditions for the first production of a living organism are now present, which could ever have been present. But if (& oh what a big if) we could conceive in some warm little pond with all sorts of ammonia & phosphoric salts, light, heat, electricity &c present, that a protein compound was chemically formed, ready to undergo still more complex changes, at the present day such matter wd be instantly devoured, or absorbed, which would not have been the case before living creatures were formed.”

There have been several attempts over the last 150 years, starting with Miller and Urey in 1952, to create physical analogues for this famous insight (See:  The origin of life on Earth: new developments). What such a physico-chemical environment on the early Earth could have been like has also been a fertile topic for discussion: literally warm pools at the surface; hot springs; seawater around deep-ocean hydrothermal vents; even droplets in clouds in the early atmosphere. Attention has recently moved to Darwin’s original surface pools through examination of modern ones. The most important content would be dissolved phosphorus compounds, because that element helps form the ‘backbone’ of the helix structure of RNA and DNA. But almost all natural waters today have concentrations of phosphorus that are far too low for such linkages to form by chemical processes, and also to produce lipids that form cell membranes and the ATP (adenosine triphosphate) so essential in all living metabolism. Phosphorus availability has been too low for most of geological time simply because living organisms are so efficient at removing what they need in order to thrive.

Mono Lake in semi-arid eastern California – a ‘soda lake’- is so concentrated by evaporation that pillars of carbonate grow above its surface

For the first life to form, phosphorus would somehow have had to be concentrated in watery solution as phosphate ions – [PO ₄]³⁻. The element’s source, like that of all others in the surface environment, is in magmas and the volcanic rocks that they form. Perhaps early chemical weathering or reactions between lavas and hydrothermal fluids could have released phosphate ions to solution from a trace mineral present in all lavas: the complex phosphate apatite (Ca10(PO4)6(OH,F,Cl)2). But that would still require extreme concentration for it to be easily available to the life-forming process. In January 2024 scientists at the University of Washington in Seattle, USA (Haas, S. et al. 2024. Biogeochemical explanations for the world’s most phosphate-rich lake, an origin-of-life analog. Nature Communications, v. 5, article 28; DOI: 10.1038/s43247-023-01192-8) showed that the highest known concentrations of dissolved phosphorus occur in the so called “soda lakes” that are found in a variety of modern environments, from volcanically active continental rifts to swampy land. They contain dissolved sodium carbonate (washing soda) at very high concentrations so that they are extremely alkaline and often highly salty. Usually, they are shallow and have no outlet so that dry weather and high winds evaporate the water. Interestingly, the streams that flow into them are quite fresh, so soda lakes form where evaporation exceeds annual resupply of rainwater.

The high evaporation increases the dissolved content of many ions in such lakes to levels high enough for them for them to combine and precipitate calcium, sodium and magnesium as carbonates. In some, but not all soda lakes, such evaporative concentration also increases their levels of dissolved phosphate ions higher than in any other bodies of water. That is odd, since it might seem that phosphate ions should combine with dissolved calcium to form solid calcium phosphate making the water less P-rich.  Haas et al. found that lakes which precipitate calcium and magnesium together in the form of dolomite (Ca,Mg)CO3 have high dissolved phosphate. Removal of Ca and other metal ions through bonding to carbonate (CO3) deprives dissolved phosphate ions in solution of metal ions with which they can bond. But why has dissolved phosphate not been taken up by organisms growing in the lakes: after all, it is an essential nutrient. The researchers found that some soda lakes that contain algal mats have much lower dissolved phosphate – it has been removed by the algae. But such lakes are not as salty as those rich in dissolved phosphate. They in turn contain far less algae whose metabolism is suppressed by high levels of dissolved NaCl (salt). Hass et al.’s hypothesis has now been supported by more research on soda lakes.

In an early, lifeless world phosphate concentrations in alkaline, salty lakes would be controlled by purely inorganic reactions. This strongly suggests that ‘warm little soda lakes’ enriched in dissolved sodium carbonate by evaporation, and which precipitated dolomite could have enabled phosphorus compounds to accumulate to levels needed for life to start. They might have been present on any watery world in the cosmos that sustained volcanism.

See also: Service, R.F. 2025. Early life’s phosphorus problem solved? Science, v. 387, p. 917; DOI: 10.1126/science.z78227f; Soda Lakes: The Missing Link in the Origin of Life? SciTechDaily, 26 January 2024. .

A fully revised edition of Steve Drury’s book Stepping Stones: The Making of Our Home World can now be downloaded as a free eBook

The peptide bond that holds life together may have an interstellar origin

Published on by zooks777Leave a comment

In the 1950s Harold Urey of the University of Chicago and his student Stanley Miller used basic lab glassware containing 200 ml of water and a mix of the gases methane (CH4), ammonia (NH3) and hydrogen sulfide (H2S) to model conditions on the early Earth. Heating this crude analogue for ocean and atmosphere and continuous electrical discharge through it did, in a Frankensteinian manner, generate amino acids. Repeats of the Miller-Urey experiment have yielded 10 of the 20 amino acids from which the vast array of life’s proteins have been built. Experiments along similar lines have also produced the possible precursors of cell walls – amphiphiles. In fact, all kinds of ‘building blocks’ for life’s chemistry turn up in analyses of carbonaceous chondrite meteorites and in light spectra from interstellar gas clouds. The ‘embarrassment of riches’ of life’s precursors from what was until the 20th century regarded as the ‘void’ of outer space lacks one thing that could make it a candidate for life’s origin, or at least for precursors of proteins and the genetic code DNA and RNA. Both kinds of keystone chemicals depend on a single kind of connector in organic chemistry.

Reaction between two molecules of the amino acid glycene that links them by a peptide bond to form a dipeptide. (Credit: Wikimedia Commons)

Molecules of amino acids have acidic properties (COOH – carboxyl) at one end and their other end is basic (NH2 – amine). Two can react by their acid and basic ‘ends’ neutralising. A hydroxyl (OH–) from carboxyl and a proton (H+) from amine produce water. This gives the chance for an end-to-end linkage between the nitrogen and carbon atoms of two amino acids – the peptide bond. The end-product is a dipeptide molecule, which also has carboxyl at one end and amine at the other. This enables further linkages through peptide bonds to build chains or polymers based on amino acids – proteins. Only 20 amino acids contribute to terrestrial life forms, but linked in chains they can form potentially an unimaginable diversity of proteins. Formation of even a small protein that links together 100 amino acids taken from that small number illustrates the awesome potential of the peptide bond. The number of possible permutations and combinations to build such a protein is 20100 – more than the estimated number of atoms in the observable universe! Protein-based life has almost infinite options: no wonder that ecosystems on Earth are so diverse, despite using a mere 20 building blocks. Simple amino acids can be chemically synthesised from C, H, O and N. About 500 occur naturally, including 92 found in a single carbonaceous chondrite meteorite. They vastly increase the numbers of conceivable proteins and other chain-molecules analogous to RNA and DNA: a point seemingly lost on exobiologists and science fiction writers!

Serge Kranokutski of the Max Planck Institute for Astronomy at the Friedrich Schiller University in Jena, German and colleagues from Germany, the Netherlands and France have assessed the likelihood of peptides forming in interstellar space in two publications (Kranokutski S.A. and 4 others 2022. A pathway to peptides in space through the condensation of atomic carbon. Nature Astronomy, v, 6, p. 381–386; DOI: 10.1038/s41550-021-01577-9. Kranokutski, S.A. et al. 2024. Formation of extraterrestrial peptides and their derivatives. Science Advances, v. 10, article eadj7179; DOI: 10.1126/sciadv.adj7179). In the first paper the authors show experimentally that condensation of carbon atoms on cold cosmic dust particles can combine with carbon monoxide (CO) and ammonia (NH3) form amino acids. In turn, they can polymerise to produce peptides of different lengths. The second demonstrates that water molecules, produced by peptide formation, do not prevent such reactions from happening. In other words, proteins can form inorganically anywhere in the cosmos. Delivery of these products, through comets or meteorites, to planets forming in the habitable ‘Goldilocks’ zone around stars may have been ‘an important element in the origins of life’ – anywhere in the universe. Chances are that, compared with the biochemistry of Earth, such life would be alien in an absolute sense. There are effectively infinite options for the proteins and genetic molecules that may be the basis of life elsewhere, quite possibly on Mars or the moons of Jupiter and Saturn: should it or its chemical fossils be detectable.

Extraterrestrial sugar

Published on by zooks7771 Comment

The coding schemes for Earth’s life and evolution (DNA and RNA), its major building blocks and basic metabolic processes have various sugars at their hearts. How they arose boils down to two possibilities: either they were produced right here by the most basic, prebiotic processes or they were supplied from interplanetary or interstellar space. All kinds of simple carbon-based compounds turn up in spectral analysis of regions of star formation, or giant molecular clouds: CN, CO, C­2H, H2CO up to 10 or more atoms that make up recognisable compounds such as benzonitrile (C6H5CN). Even a simple amino acid (glycene –CH2NH2COOH) shows up in a few nearby giant molecular clouds. Brought together in close proximity, instead of dispersed through huge volumes of near-vacuum, a riot of abiotic organic chemical reactions could take place. Indeed, complex products of such reactions are abundant in carbonaceous meteorites whose parent asteroids formed within the solar system early in its formation. Some contain a range of amino acids though not, so far, the five bases on which genetics depends: in DNA adenine, cytosine, guanine and thymine (replaced by uracil in RNA). Yet, surprisingly, even simple sugars have remained elusive in both molecular clouds and meteorites.

Artist’s impression of the asteroid belt from which most meteorites are thougtht to originate (Credit: NASA/JPL)

A recent paper has broken through that particular barrier (Furukawa, Y. et al. 2019. Extraterrestrial ribose and other sugars in primitive meteorites. Proceedings of the National Academy of Sciences. Online; DOI: 10.1073/pnas.1907169116). Yoshihiro Furukawa and colleagues analysed three carbonaceous chondrites and discovered traces of 4 types of sugars. It seems that sugar compounds have remained elusive because those now detected are at concentrations thousands of times lower than those of amino acids. Contamination by terrestrial sugars that may have entered the meteorites when they slammed into soil is ruled out by their carbon isotope ratios, which are very different from those in living organisms. One of the sugars is ribose, a building block of RNA (DNA needs deoxyribose). Though a small discovery, it has great significance as regards the possibility that the components needed for living processes formed in the early Solar System. Moon formation by giant impact shortly after accretion of the proto-Earth would almost certainly have  destroyed such organic precursors. So, if the Earth’s surface was chemically ‘seeded’ in this way it is more likely to have occurred at a later time, perhaps during the Late Heavy Bombardment 4.1 to 3.8 billion years ago (see: Did mantle chemistry change after the late heavy bombardment? In Earth-logs September 2009)